Diospyros lotus (date-plum): 127797770
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Entry
127797770 CDS
T10632
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127797770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dlt03041
]
127797770
Spliceosome [BR:
dlt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
127797770
Complex C
U5 SnRNP specific factors
127797770
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
Ras
Dynamin_N
Septin
SRPRB
Motif
Other DBs
NCBI-GeneID:
127797770
NCBI-ProteinID:
XP_052186871
LinkDB
All DBs
Position
3:complement(41517412..41524099)
Genome browser
AA seq
988 aa
AA seq
DB search
MDESLYDEFGNYIGPEIESDQESDREEEDEDLPDKDDDEEDVSGGEDAGGAANGWMTTTN
DVDMDNQIVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEQPIINPVKNIKFELGVKDS
STYVSTQFLLGLMSNPSLVRNVALVGHLQHGKTLFMDMLVEQTHHISTFDQNSEKHMRYT
DTRIDEQERKISIKAVPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLI
VDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKLRHTIEIINNH
ISAASSTAGNVQVIDPAVGNVCFASASAGWSFTLHSFAKLYVKLHGIPFDANKFASRLWG
DYYFDSDARAFRKKQPASGVERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSN
AAYKLNVRPLLRLACSSVFGSATGFTDMIVHHIPSAQESATGKVEHIYTGPKDSAICKAM
EECDPSGPLMVNITKLYPKSDCSVFDAFGRVYSGEIQTGQTVRVLGEGYSPDDEEDMTVK
EVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNLDYDEDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSLKCFAETPNKRNKITMIAEPLERGLAEDIENGVV
SLDWPRKKLGDFFQTKYDWDLLAARGIWAFGPDKQGPNILLDDTLSSEVDKTLLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DMRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMVVELAQQAADLHQQMM
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaagcttgtatgatgaatttgggaactacatcggaccggaaattgagtcggat
caggagagtgacagagaggaggaggacgaagacctccctgataaggatgatgacgaggaa
gatgtgtccggtggtgaggatgcaggtggtgcagccaatgggtggatgactaccactaat
gatgttgacatggataatcaaattgtccttgctgaggacaagaagtactatccgaccgca
gaagaagtttatggcgaagaagtcgaaacattggtcatggatgaagatgagcagcccctt
gaacaaccaataattaatccagtcaagaatatcaagtttgagttgggcgttaaggattct
tctacttacgtgtcaacccaatttcttttagggcttatgtcaaacccttctttggttcgg
aatgttgccttggtaggacacttacagcatgggaaaacccttttcatggatatgttggtt
gagcagacacatcatatttcaacatttgatcaaaacagtgagaagcatatgagatataca
gatacaagaatagatgagcaagagagaaaaatatcaatcaaggcagttcccatgtcactt
gttcttgaagacagcaattcaaaatcatatctctgtaatatcatggatacccctggtcat
gtcaacttctctgatgaaatgactgctgctctcaggcttgccgatggtgctgtcttgatt
gttgatgccgccgaaggagtaatggttaatacagaaagggctatacgtcatgcaattcag
gaacgccttcctattgtagttgtaatcaataaggttgacaggctgattactgaactaaaa
ctgcccccaaaggatgcttaccataagctccggcatacaattgaaatcatcaataaccac
atatctgctgcatcttcaactgctggaaatgtccaagttattgatccagctgttggaaat
gtttgttttgcaagtgccagtgctggatggtcttttactctgcattcatttgctaaatta
tatgttaaactccatggtataccatttgatgctaataaatttgcatcacgtctttgggga
gattactactttgattctgatgctagagcatttaggaagaaacaacctgcaagtggcgtt
gaaaggtcgtttgtccagtttgtgctagaaccgctatacaaaatatatagccaagtaatt
ggagaacataagaagagtgtggaggcaactcttgctgaacttggtgtgactctcagcaat
gcagcttacaaactaaatgttaggcctttgcttagattggcttgcagttctgtttttggc
tccgcaactggctttactgatatgatagttcatcacattccttctgctcaagagtcggct
actgggaaggttgaacacatttatactggcccaaaggactctgctatttgcaaggccatg
gaagaatgtgatccttctggccctctgatggttaatatcaccaaactgtatcctaaatct
gactgcagtgtttttgatgcttttggaagggtttatagtggtgaaatccagacagggcag
accgtgcgggttttgggggaaggctattcgccagatgatgaggaggacatgacagtgaaa
gaagtaacaaaactatgggtttatcaggctcgttacaggattcccatcagcaaggctcct
cctggttcttgggttctcattgaaggtgtggacgcatctatcatgaaaactgccacactc
tgtaatctggactatgacgaggatgtgtatatatttcggcctctgcagttcaatactctt
cctgtagtcaaaacagccactgagccactaaatccaagtgaactgcccaaaatggtggag
ggtcttaggaaaatcagcaaaagctatcctctggccataaccaaagttgaggaatcaggg
gagcacacaattctaggtactggagagttgtatctggattctataatgaaagaccttagg
gaactctattcagaagtagaagtcaaggtggcagatcctgttgtttcattctgtgaaaca
gtggtggagtcttcatcattgaaatgttttgctgaaacacccaacaagagaaacaagata
actatgattgcagaaccattggagagaggacttgctgaggacattgagaatggtgttgta
agccttgattggccccgaaagaaacttggtgactttttccagacaaaatatgattgggat
ttgcttgctgctcgtggcatctgggcatttgggcctgacaagcagggaccgaacattcta
ttggatgatacactttcaagtgaagtggacaagacactgctgaatgccgttaaagattct
attgttcaaggattccaatggggtgcccgagaaggtcccctgtgtgatgaacccattaga
aatgtcaagttcaaaatagttgatgcgaggatagcacctgaacctttgcatcggggtagc
ggtcaaattatcccaacagctcgacgtgtggcctactcggccttccttatggcaacgccc
aggctaatggagccagtatactatgtggagatacaaacacccattgattgtgtatctgca
atctacactgtgttgtcacggaggcgtgggcatgttacagcggatgttcctcaaccggga
accccagcttatattgtcaaggcatttttaccagtgattgaatcatttggctttgagaca
gacatgaggtatcatactcaaggccaggcattctgtctctcagtatttgatcactgggct
atagtacctggtgaccctcttgacaagagtatagtactaagaccacttgagcctgctcca
attcaacacctggctcgtgagttcatggtgaagacaagacgtagaaagggaatgagtgaa
gatgtgagcatcaacaagttcttcgacgaagctatggttgtcgagctagcacagcaggca
gctgatcttcatcagcagatgatgtga
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