Diospyros lotus (date-plum): 127810205
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Entry
127810205 CDS
T10632
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127810205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127810205
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127810205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA_23
AAA_25
Arf
Zeta_toxin
AAA
ORC-CDC6-like
AAA_30
nSTAND3
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
127810205
NCBI-ProteinID:
XP_052205505
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All DBs
Position
9:34606791..34609909
Genome browser
AA seq
330 aa
AA seq
DB search
MAVKETSPNPTVEINDLSFTYPGIDGHPPPGSAPLIDGFSLTLHAGDRCLLVGSNGAGKT
TILKILGGKHMVEPDMVRVLGRSAFHDTFLTSSGDLCYLGGEWRREVAFAGFEVPIQMDV
SAEKMIFGVSGIDPQRRTELIKVLGIDLSWRMHRASDGQRRRVQICMGLLKPFKVLLLDE
ITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPSHIVYVAHGKLQLSMPMH
KVNEISNLSLMRTVERWLRKERDEERKRRKERKANGLPEFEKHVEGSRVTGDPARAHVRA
MNNGWAAGRLHSTIAGEENFVFSSNRVLRQ
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaaagagacttctcccaatccgacggtggagatcaacgatctcagtttcacc
taccccggcatagacggccatcctccgccgggctccgcccccctcatcgacggcttctcc
ctcactctccacgccggcgatcgctgcctcctcgtcggctccaatggcgccgggaaaacg
acgattctcaagattctcggagggaagcacatggtggagcctgacatggttcgcgtgctt
gggagatcggcgtttcacgacacgtttttgacgtcttccggtgatctctgttacctcggt
ggagagtggaggcgagaggttgcttttgctggctttgaggtgccaatacaaatggatgtt
tctgctgagaagatgatttttggggtttctggaattgatcctcagagaagaactgaactc
attaaggtgttaggtattgatctatcatggagaatgcacagagcatctgatggtcaaaga
agacgtgtgcagatctgcatgggtctcttaaagccattcaaggtgcttcttctcgatgag
attacagtggaccttgatgtgcttgcaagggccgacctgctcaagtttcttagaaaggaa
tgtgaagagcgaggtgctacaattatatatgcaacacatatctttgatggtcttgaggat
tggccatcacatattgtttatgttgctcatgggaaattgcaactatcaatgccaatgcat
aaagttaatgagatcagcaatttgtcacttatgagaacagtggagcgctggctgcggaaa
gaaagagacgaggagaggaagagaaggaaagaaaggaaggcaaacggtcttccggaattt
gaaaagcatgtcgagggcagccgtgtgactggggatccagcccgtgcgcacgtccgtgca
atgaacaatgggtgggctgcaggaaggctgcattccaccattgctggtgaagagaatttc
gtgttcagctcaaacagggttctcagacaataa
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