Dehalogenimonas lykanthroporepellens: Dehly_0651
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Entry
Dehly_0651 CDS
T01264
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dly
Dehalogenimonas lykanthroporepellens
Pathway
dly03030
DNA replication
dly03410
Base excision repair
dly03420
Nucleotide excision repair
dly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dehly_0651
03410 Base excision repair
Dehly_0651
03420 Nucleotide excision repair
Dehly_0651
03430 Mismatch repair
Dehly_0651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dly03032
]
Dehly_0651
03400 DNA repair and recombination proteins [BR:
dly03400
]
Dehly_0651
Enzymes [BR:
dly01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Dehly_0651
DNA replication proteins [BR:
dly03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dehly_0651
DNA repair and recombination proteins [BR:
dly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Dehly_0651
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dehly_0651
MMR (mismatch excision repair)
DNA ligase
Dehly_0651
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dehly_0651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
UPF0758_N
HTH_78
Motif
Other DBs
NCBI-ProteinID:
ADJ25958
LinkDB
All DBs
Position
complement(617664..619727)
Genome browser
AA seq
687 aa
AA seq
DB search
MDEAKKRIDTLRKQITHHNYLYYVKDEPEISDQEYDILFRELQILENEFPELASDESPTK
IVGAKPSKTFSRIKHVKPLLSLANAFSHEELKVWYERIIKSLSPETVEFVCEHKIDGLAV
AVAYHEGKLVTGATRGDGETGEDVTNNLKTIYSLPHTVADNVPDKFEVRGEVFLPTDNFL
RLNQMRLKQRLPLFANPRNAAAGSVRQLDPNVTAQRPLDIFIYGLGWAEPADFADNHWDT
LQKLGEIGFKINPNNRLCHTLEDIQSYYQEWLGKRDQLPYEADGIVIKVNDYSQQESLGQ
IAREPRWAIAFKFPAPQAITRLKDIGISVGRTGTLNPFAILEPVKLGGVTIQRATLHNEE
DIRRKDIRIGDKVIVQRAGDVIPQIVRPIIEDSSNRAEVFSITEKLKGPDSKPHCPVCNA
VVTRTAGEVMYYCPNTACPAQLAEKLEHFVSKSGMDIRGMGEKLSTAFLNEGLIKDVADL
YNLKTEHLVGREGMKEKSAEKLITSISNSKNRPLHNVIYALGIRHIGAENAQSLAREFGS
LSELAKASLERLISIPGIGVKIADSMLNYFSEPHNQKIVSRLNEILETPTMLPANNAQFS
SLISGKEVVITGSLKSMTRHDAWEMIRRAGGIPKADITTKTSYLVAGEKGGTKIKKAKEG
KIPIISEDDLLAMVESRTNQSQPRLFG
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggcaaaaaaacgaatagatactctccggaagcagattacccatcacaattat
ttatattatgttaaagatgaaccggaaatttctgatcaggaatatgacattctattcaga
gaattgcagattctcgaaaatgaattcccagaacttgcttcagatgaatccccgaccaag
atagttggcgccaagccttccaaaactttcagcagaatcaaacatgttaaaccattactg
tcacttgccaacgcattttctcatgaagagcttaaggtatggtacgaacggataattaaa
tcactatcaccggaaacggtggagttcgtttgcgagcataaaatcgatggtttagcggtt
gcggtcgcttatcatgaagggaaattggtcacaggggcgaccaggggcgatggagaaacc
ggtgaagatgttaccaacaatctgaaaaccatttacagccttccgcatacggtcgcagat
aatgttccggataagttcgaagtcagaggcgaagtgtttttaccaacggataatttttta
cggttgaatcagatgcgcctgaagcaacgtttaccattgtttgctaacccccgaaacgcc
gccgcaggttcggtcaggcagttggatcccaatgttaccgcccagcggccacttgatatt
ttcatatatggcttgggctgggcggagccggcagatttcgccgataaccattgggatact
ctacaaaaactgggcgaaataggattcaaaattaatccgaacaacaggttgtgtcatact
ctcgaagatatacaatcctattatcaggaatggctgggcaaaagagatcagttgccgtat
gaagctgacggtatcgttatcaaagtaaatgattattcacaacaggaatcacttggtcaa
atcgcgagagaacctaggtgggcaattgccttcaaatttccggcacctcaagctatcacc
cgtctcaaggacattggaattagtgtcgggcgaaccgggactttgaacccatttgcgatt
ctggaaccagttaaacttggtggtgtcactatccagagagctactcttcacaatgaagaa
gatatcagacgcaaggatataagaatcggggacaaggttatcgttcaaagagcgggggac
gtcattccccaaatagtaagacctattatcgaagacagtagcaatagggctgaggtgttc
agtattactgaaaaattgaagggtcctgatagcaaaccccattgtccggtatgcaacgcc
gtagtcacacgtactgccggtgaagtcatgtattattgcccgaataccgcctgcccggca
cagttggcggaaaaactggaacactttgtttctaagtctggcatggatatcaggggtatg
ggagaaaaactatcgacagcttttttgaacgaaggattaatcaaagatgttgccgacttg
tataatttgaagaccgagcatttagttgggcgggaaggtatgaaggagaaaagcgcggaa
aagcttatcacttcgatttccaattcgaagaatcgaccgctacacaacgtcatatacgca
cttggaattcgccatataggggcagaaaatgctcagtcgctggccagagaattcggatca
ctatcggagctggctaaagcctccctggaaagactgatttcaataccaggaatcggtgtg
aaaatcgctgacagtatgttgaattacttcagtgaaccccacaatcagaaaattgtatcc
agattaaacgaaattcttgagaccccgactatgctgcctgctaacaatgcccaattcagt
tcactaatatccggaaaagaggtggtcatcaccggcagtttgaaatccatgacccgtcat
gatgcctgggagatgatcaggcgcgcaggaggtataccgaaagctgatattaccacaaag
accagttatctggtcgccggagaaaagggcggcaccaaaatcaaaaaagccaaagagggg
aagattccgattatctctgaggatgatttgctggcgatggttgagagccgcactaatcaa
tctcagccaaggcttttcggatga
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