Dehalococcoides mccartyi DCMB5: dcmb_604
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Entry
dcmb_604 CDS
T02476
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dmd
Dehalococcoides mccartyi DCMB5
Pathway
dmd03030
DNA replication
dmd03410
Base excision repair
dmd03420
Nucleotide excision repair
dmd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
dcmb_604 (ligA)
03410 Base excision repair
dcmb_604 (ligA)
03420 Nucleotide excision repair
dcmb_604 (ligA)
03430 Mismatch repair
dcmb_604 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmd03032
]
dcmb_604 (ligA)
03400 DNA repair and recombination proteins [BR:
dmd03400
]
dcmb_604 (ligA)
Enzymes [BR:
dmd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
dcmb_604 (ligA)
DNA replication proteins [BR:
dmd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
dcmb_604 (ligA)
DNA repair and recombination proteins [BR:
dmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
dcmb_604 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
dcmb_604 (ligA)
MMR (mismatch excision repair)
DNA ligase
dcmb_604 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
dcmb_604 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
HHH
BRCT_2
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
AGG06231
LinkDB
All DBs
Position
complement(587097..589130)
Genome browser
AA seq
677 aa
AA seq
DB search
MFSPLIEVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELVTPDSPTQ
KVGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLGNISFQIDCEPKMDGLAV
ALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNGFA
KLNRERADKGLPPFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHWQI
LDYFSKIGFRINPLNRLVNTLEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHQLGD
VGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHNED
DILRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNPNLNRPACPVCG
GEIYRPAGEAMHYCANVSCPAQFERQLEHFVSRGAMDIRGIGESLSVILAQQGLVKNVSD
LYYLTTADLLQLPRMGEKSADNIIDAIADSKTRPLDRVIFGLGVRHVGNETATLLSRHYG
NIWALAKTGLGELQTIPDIGDKIASSIVAYFSEEKNVAVIRRLEEAGVRLTSDQKPVNKN
MPFSGMEFVVTGKLESFSREEAQEKIRSLGGTAKDNVTKATNYLVVGADAGSKLAKARSM
GVKELSEREFINMLEQS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgttttcccccttgattgaagtagaaaacctaaggcgtgaaataaaccgccataaccag
ctatattacgttcaggataatcctgaaatctctgatgcccagtatgacactctaatccgc
cgcctgaaagaactggaggaagcccaccccgaactggttaccccggactcacccacccaa
aaagtcggggcagagccgcttaaagctttcgggattgtaaaccacccttatccgttactt
tctctggcaaatgctttttcagatacagaactggaagcttggtaccagcgggtaaagaaa
ctgctgggtaatatttcttttcagatagactgcgagcccaaaatggacggcctggcggta
gcccttacctaccggaacggaaaatttgcaaccggtgctacccggggtgacggatttcag
ggtgaaaatattacccgaaacctgcggactatccattccatacctttaaacgccgaacca
aacgcaccccctgtttttgaagtaaggggtgaagtatatctttccaaaaatggctttgcc
aaactcaaccgcgaaagggcggataaagggctgcccccttttgccaacccacgcaatgcc
gccgccggttcactccgccagcttgacccgtcagttacggccgaaagacctctggatata
tttatttatgctttaggatattcagaagacagcctactgcctgacagccactggcaaata
ctggattatttcagcaaaattggctttaggataaatccacttaaccgcctggtaaacacc
ctggaagaagccaaagaatattaccgccagatggcagcaaaccgggcttcactgccttat
gaagcagacggagtagttttcaaggtggactccgtctctctgcaacaccagctgggggac
gtaggtcgtgaaccccgctgggccatagcctataaattcccggctgaacaggtcatgacc
cgcctgaagaaaataggcatatctgtaggccgtacaggcacattaaacccctttgccgta
cttgagccggtaaatgtgggcggagtagtggtaaaacaggccgccctgcataatgaagat
gatatactccgcaaagatatccgcgaaggagatacggtcattatccagcgggcaggtgaa
gtaatacctgaggtagttgcaccggtactgagtaaacgcaaccccgaatcaaaacccttc
agaatggaagaatctctgtttaacccgaaccttaaccgccctgcctgcccggtgtgcggc
ggggaaatataccgccccgcaggcgaggctatgcactactgtgccaacgtttcctgcccc
gctcagtttgaacgccagcttgaacattttgtttccagaggggctatggatatacgcggt
atcggcgaaagcctaagcgtaatactggcacagcaggggctggtgaaaaacgtatcggac
ctgtactacctgaccaccgctgatttactgcaactgccgcgtatgggtgaaaaaagtgcg
gataatataatagacgccattgcagacagtaaaacccgcccgctggatagggtaatattc
ggtctgggtgtacgccacgtgggcaacgagaccgccaccctgctctcaagacactacggg
aatatatgggcactggctaaaaccggtcttggtgaactgcaaactatacctgatatcggt
gacaaaatagccagcagtattgtagcgtatttcagcgaagaaaaaaatgtggctgttatc
cgccgtctggaagaagcaggcgtacggcttacttcagaccagaaaccggtaaacaaaaat
atgccattttccggcatggagtttgtagtcaccggcaagctggaaagtttcagccgcgaa
gaagcacaggaaaaaatccgctcactcggcggtacagccaaggataacgtcaccaaagca
accaactatttagtagtgggtgcagatgccggctccaaactggccaaagcccgaagtatg
ggtgtaaaagagctttccgaacgggaatttataaatatgctggagcaatcttga
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