Dipodomys merriami (Merriam's kangaroo rat): 138830934
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Entry
138830934 CDS
T11079
Symbol
Eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138830934 (Eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmer03041
]
138830934 (Eftud2)
Spliceosome [BR:
dmer03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
138830934 (Eftud2)
Complex C
U5 SnRNP specific factors
138830934 (Eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
138830934
NCBI-ProteinID:
XP_069883982
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDEDDDDVGEHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPITVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGIDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPASNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttatatgatgaatttgggaattatattggacccgagcttgattctgat
gaagatgatgatgaattgggaagagagaccaaagatcttgatgagatggatgatgatgag
gatgatgatgacgtaggagaacatgatgaagatcacccagggatggaggtggtgctgcac
gaagacaagaagtactacccaacagctgaggaggtatatggtcctgaagtggagaccata
gttcaggaggaagatacccagcctcttacagaacccattattaaaccagtgaaaacaaag
aaattcactctgatggagcagacgttacctatcacagtgtatgagatggattttttggca
gatctgatggataattcagagctcatcagaaacgtgactctttgtggccatctccaccat
ggcaagacatgttttgtagattgtttaatagaacaaacgcacccagaaatccgaaaacgc
tatgaccaggatctatgctatactgacatcctcttcacagagcaagagagaggtgttggc
atcaagagcacacctgtgacagtggtcctgcctgataccaaagggaaatcttacctcttc
aatatcatggacactccaggacatgtgaatttttctgatgaggtcacagctggcttgcgc
atctcagatggagtggtccttttcattgatgctgctgagggggtgatgctgaacactgag
cggctgatcaagcatgcagtgcaagaaaggctggcagtcaccgtgtgcatcaacaaaatt
gaccggctgatcctagagctgaagctgcctccaactgatgcttattacaagctgcgccac
attgtggatgaggtcaatgggttaataagcatgtattccaccgatgagaatctgatcctt
tctccgctgctgggcaatgtctgcttctccagctcccagtacagcatctgcttcactctg
ggctcatttgccaagatctacgctgacacatttggtgacattaattaccaggaatttgct
aaaagactctggggtgacatctatttcaaccctaaaacgcgaaaattcacaaaaaaggcc
ccaactagcagctcccagagaagcttcgtggagtttatcttggagcccctttataagatc
cttgctcaggtggtgggagatgtagataccagcctcccaaggacactagatgagcttggc
atccatctcaccaaggaggagctgaagctgaacatccgccctctgctcaggctagtctgc
aaaaagttctttggagagttcacaggctttgtggacatgtgtgtgcagcatatcccttct
ccaaaagtgggcgccaagccaaagattgagcacacctatactggtggtatagactctgac
cttggcgaggccatgagtgactgtgaccctgatggccctctgatgtgccatactactaag
atgtatagtacagatgatggagttcaatttcacgcttttggccgggtactgagtggtaca
attcatgctgggcagcctgtcaaagtgctaggggagaactacacactggaggatgaggaa
gactcccaaatttgcaccgtgggccgtctttggatctctgtggccaggtaccacattgag
gtaaaccgtgttcctgctagcaactgggttctgattgaaggtgttgatcagccaattgtg
aagacagcaaccataactgaacctagaggcaatgaggaggctcaaattttccggcctttg
aagttcaataccacatctgttatcaagattgctgtggagcctgtcaacccctcagagctg
cccaagatgcttgatggcttgcgcaaggtcaacaagagctatccttcccttaccaccaag
gtggaagaatctggtgaacatgtgattctgggcactggggagctctacctggactgtgtg
atgcacgatctgaggaagatgtactcggagatagacatcaaggtggctgacccagttgtc
acgttttgtgagacagtggtggaaacatcctccctcaagtgctttgctgaaacacccaat
aagaagaataagatcaccatgattgctgaacctcttgagaagggtcttgctgaagatata
gaaaatgaggtggtccagatcacctggaacaggaagaagctgggagagttcttccagacc
aagtatgactgggatctgctggctgcccgttctatctgggcttttggccctgatgccaca
ggccccaacatcctggtagatgataccctgccctcagaggtggacaaggctcttcttggt
tcagtgaaggacagcatcgttcaaggtttccagtggggaaccagggaggggcccctatgt
gatgagttgattcgaaatgtcaagtttaagatcctggatgcagtggttgcccaagagccc
ctgcaccgaggtgggggccagatcatccccacagccaggagagtcgtctactctgccttc
ctcatggccacccctcgtctgatggagccttactactttgtagaggttcaggcccctgca
gattgtgtgtcagctgtttacactgtcctggccagacgcagggggcacgtaactcaggat
gcacccatcccaggctcccctctctacactatcaaagctttcatcccagccatcgactct
tttggctttgagactgatctgcggactcacacccaaggacaggcgttttctttgtctgtc
ttccatcattggcagattgtacctggtgatcctctggacaagagcattgttatccgcccc
ttagagccacagccagctcctcatcttgcccgggaattcatgatcaaaacacgtcggagg
aaaggcctgagtgaagatgtgagcatcagcaagttctttgatgatcctatgttgctggag
cttgccaaacaggatgttgtactcaattaccccatgtga
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