Daphnia magna (water flea): 116931222
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Entry
116931222 CDS
T07514
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116931222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmk03041
]
116931222
Spliceosome [BR:
dmk03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116931222
Complex C
U5 SnRNP specific factors
116931222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EFTUD2
GTP_EFTU
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
116931222
NCBI-ProteinID:
XP_032794660
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All DBs
Position
LG9:complement(132292..136412)
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AA seq
982 aa
AA seq
DB search
MDADLYDEFGNYIGPELESDEEENEGDEADRDDEAEDYGDNDSEEAMDQTVADGEPQMAI
VLHEDKKYYPSALEVYGPGVETLVQEEDAQPLTEPIIAPVKRRKFQVAEQELPETTYNME
FLADLMDSAELIRSVALVGHLHHGKTSFMDCLLMQTHPDLQTGRPGSGEEKPVRYTDTLF
TEQERGVSIKATPITVVMPDLNEKSFLLNMFDTPGHVNFSDEVTAALRLCDGIVLFVDAV
EGVMLNTERILKHAVQEKMAITVCINKIDRLILELKLPPQDAYYKLRYIIEEINGLLGLY
SDEENPKIVSPLLGNVCFASAQFSVCFTLKSFAKLYSDTYGSDINDHELARRLWGDIYFN
SKTRKFTKKPPHSSAQRSFIEFILEPLYKIFAQVVGDLDTSLPQLLDELGIRLTVEEQRL
NTRPLLRLVCSRYLGTFSGFVDMCVKHIPSPVVAARTKVEHIYTGPLESILGEDMVNCDP
NGQLVVHTTKQYPTEDCTGFYVLGRVLSGTLHAHQNVRLLGENYSLSDEEDSRLLTIGRL
WIYEARYKIEVNRVTAGSWVLIEGIDASVVKTSTIVQASIDEDLYICRPLKFNTQSIIKI
AVEPVNPSELPKMLDGLRKVNKSYPLLSTRVEESGEHVILGTGELYLDCVMHDLRKMYSE
IDIKVADPVVSFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVQINWN
KKKLSEFFQNKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVNKSLLNTVKDSIVQGF
QWGTREGPLCEEPIRNAKFKILDAVIADEPVHRGGGQIIPTSRRVAYSAFLMATPRLMEP
YLFVEVQAPADCVSAVYSVLARRRGHVTQDAPVPGSPLYIIKAFIPAIDSFGFETDLRTH
TQGQAFCLSVFHHWQIVPGDPLDKSIVLRPLEPQPATHLAREFMVKTRRRKGLSEDVSIN
KFFDDPMLLELARQDVTLTYPF
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgacctgtacgacgaattcggtaattacattggacccgagctcgaatcggat
gaggaggaaaacgaaggtgatgaagccgatcgtgacgatgaggccgaagattacggtgac
aatgattccgaagaagccatggatcaaacggtggctgatggtgaaccgcaaatggcaatt
gtcttgcatgaagacaagaaatattacccatcagcattagaggtttatggtcctggtgtt
gagacattggttcaagaagaagatgcccaacccttgactgaacctatcatagcacctgta
aaacgcaggaagtttcaggttgccgagcaagaactacctgaaaccacctacaatatggaa
tttttggctgacctcatggactctgccgagttgatacgctcagtggctctagtcggacat
ttgcaccatggcaaaacttccttcatggactgcctgctcatgcaaacacatcctgatctt
cagacaggcagaccaggcagtggggaggagaaacctgttaggtacacagacactctcttt
accgaacaagaaaggggggtttcaatcaaagctacaccaattacagtggtcatgccagac
ttgaatgagaaatcattccttctcaatatgtttgatacacctggtcatgtcaacttctca
gatgaagttacggcggctcttagactttgcgatggtatcgtcctttttgtcgacgcggtc
gaaggtgtcatgctgaacacagagcgcattttgaaacatgccgtccaggagaaaatggcc
atcacagtatgcatcaacaaaattgatcgactcattttggaactgaagttgccaccccag
gatgcgtattacaagctgcgctacattattgaagagatcaacggtcttttaggcctatac
agtgacgaagaaaatcccaagatcgtatcacccttgttgggcaatgtttgcttcgcttcg
gctcagttctcagtctgtttcaccctcaaatcgttcgctaaactctacagtgacacctat
ggctcagatatcaacgaccacgagttagcccgtcgtctctggggcgatatttacttcaac
agcaagaccagaaagtttacgaaaaaaccgccgcacagctctgcccaacgaagtttcatc
gagttcattcttgagccattgtataaaatctttgcccaggtcgtcggagatttggacacg
agtttgccacaactgctggatgagcttggcattcgcttgacggtcgaggaacaaaggcta
aacacccgcccacttttgagactagtctgtagtcgctatttgggcacgtttagtggtttt
gttgacatgtgcgtaaaacatattccgtcaccggttgttgctgcccgcactaaagtagag
cacatttacacgggcccgctggaatcaatccttggtgaagacatggtcaactgtgatcca
aatggtcagctggtagtccacacgaccaaacagtaccccacagaggattgcaccggattt
tacgtgctgggtcgtgtcctgagtggtactctgcatgctcatcagaacgtccgtcttctg
ggcgagaactactcgctcagcgacgaagaagactcgcgattattaacgatcggtcgctta
tggatctatgaggctcgttacaagatcgaagtgaacagagtgactgctggcagttgggtt
ctgattgaaggcattgacgcgtcggtggtcaaaacgtcgactattgtccaagctagcatc
gacgaggacttgtacatttgccgacctttgaaattcaacacccagtccatcatcaaaata
gccgttgaaccggtgaatcccagcgaattgccgaaaatgttggacggtcttcgaaaggtc
aacaaatcatatccgttgctctccacacgagtggaagaatcgggtgagcacgtgatcctc
ggcaccggtgaactctaccttgactgcgtcatgcacgatctcaggaaaatgtactctgaa
atcgacatcaaagttgctgatccggtggtctcattttgtgaaacggttgtcgaaacgtct
tcgctaaaatgtttcgccgaaacaccaaacaagaaaaataaaattacgatgattgctgag
cctcttgaaaaaggattggcagaagacatagaaaatggcgttgttcaaatcaactggaac
aaaaagaaattgagcgaatttttccaaaataagtacgactgggatttgttggcagctcgt
tccatttgggcttttggtcctgattccactggacccaacatcctcgtcgatgacacattg
ccgtctgaagtgaataagagtttgctcaatacggtcaaagattccatagttcaaggcttc
cagtggggaacgcgagaaggcccattatgcgaagaacccataaggaatgccaaattcaag
atcttggacgccgttattgcagatgaaccggttcaccgcggaggtggacaaatcatccca
acatcccgtcgtgttgcctattcggctttcttgatggccacacctcggttaatggaaccc
tatctttttgttgaagttcaagcaccagccgattgtgtttcggccgtttacagcgtcctg
gctagaagaaggggtcacgtcacccaagatgcacctgtacctggttcacctctttacatc
attaaggctttcataccggccattgattcgtttggcttcgagactgatttgcggacccat
acacaagggcaggcattttgtctgtccgtctttcaccactggcagattgttcctggcgat
cctctggacaagagcatcgtgctgcggccgttagagcctcagccagcgacacatttggcc
cgtgaatttatggtgaaaacgcgtcgccgtaagggtcttagtgaggacgtatccatcaac
aaattcttcgatgatcccatgttgctcgaacttgccagacaagatgtgacactcacctat
ccattttga
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