Desulfococcus multivorans: Dmul_12320
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Entry
Dmul_12320 CDS
T04568
Symbol
ligA
Name
(GenBank) LigA: DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dml
Desulfococcus multivorans
Pathway
dml03030
DNA replication
dml03410
Base excision repair
dml03420
Nucleotide excision repair
dml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dmul_12320 (ligA)
03410 Base excision repair
Dmul_12320 (ligA)
03420 Nucleotide excision repair
Dmul_12320 (ligA)
03430 Mismatch repair
Dmul_12320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dml03032
]
Dmul_12320 (ligA)
03400 DNA repair and recombination proteins [BR:
dml03400
]
Dmul_12320 (ligA)
Enzymes [BR:
dml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Dmul_12320 (ligA)
DNA replication proteins [BR:
dml03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dmul_12320 (ligA)
DNA repair and recombination proteins [BR:
dml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Dmul_12320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dmul_12320 (ligA)
MMR (mismatch excision repair)
DNA ligase
Dmul_12320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dmul_12320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
BRCT_2
RUBY_RBDX
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AOY58007
LinkDB
All DBs
Position
complement(1379342..1381231)
Genome browser
AA seq
629 aa
AA seq
DB search
MMQELIDLETAYPALADPGSPTARVGAPPLSKFATVRHSVPMLSLDNAFNDADVIEFDAR
VKRLLDIPDEVLYVTEPKMDGVAVELVYEDSRLVMASTRGDGITGEVITENARTIRSLPL
ILLSRGSGDIPRRIEVRGEVFIDVGGFQQLNTERAAEGLPVFANPRNAAAGSLRQLDSQV
TARRPLKFFVYGIGNVDGLRVYSHGELLLALKQLGFPVNPLVRNGLRLKAVLNRFHELER
IRHELPYAIDGMVIKVDRIEFQQRLGDKARAPRWAIAYKFAAVQETTKVLDIDIQVGRTG
ALTPVARLEPVAIGGVTVSNATLHNEDEVRRKDVRIGDTVLVQRAGDVIPEVVKVIASLR
TGNELPFDMPRTCPICGAEAKRIPGEAVTRCINVNCPAQIKGKIRHFAAKSAFDIDGLGS
KLIHQLVDRQLIRSYADIFHLDEAVLSQLDRMGPKSAGNLVKAIQASRRLPLSRFLYALG
IRHVGENTAEILARQFKTLDRLTAASTEELARIDGIGLEIAGAVRHFFDQKENQEAVQRL
LKSGVSLIMTDDPASGRLVGKTFVLTGTLASMTRIEAKARIEAAGGRVAGTISRQTDYLV
VGSNPGSKLAKAKTLGIEIIDESDLQNLL
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaggagctcatcgacctggagacagcctatccggcattggcggatcccggctcg
cccaccgcgcgggtaggcgcgccacccctctccaaattcgccacggtgcgccactccgtc
cccatgctgagcctcgacaatgccttcaacgatgcggacgtgattgaattcgacgcccgg
gtcaaacgcctgctggacattccggacgaagttctctacgtcaccgaacccaaaatggat
ggtgtagccgtcgagctggtttatgaagacagcagactggtcatggcttcgacccggggt
gacgggatcaccggcgaggtgatcaccgaaaacgctcgaaccatccgatccctcccgttg
atccttttaagtcggggctcgggggacatcccccgacgaatcgaagtgcgcggagaagtt
ttcatcgatgtcgggggttttcaacagctcaataccgaacgcgcggcagaagggctccct
gtgttcgccaatcccaggaatgccgcggcgggctcccttcggcagctcgactctcaggtg
acggcaagacgccctctcaaattcttcgtctacggcatcggaaatgtcgacggcctcagg
gtttattcccacggagaactgcttctcgccctgaaacagttggggtttccggtcaatcca
cttgtgcgaaacggtctccgactcaaggcggttctcaaccgattccatgaattggagcgg
atccgccacgaattgccctacgccatcgacggcatggtcatcaaggttgaccgcattgaa
ttccagcagcggctgggggacaaggccagggcgccgcgctgggccatcgcctataagttc
gccgccgttcaggaaaccacaaaagtactcgatatcgacatccaggtcggacgcaccggg
gcactcacccccgtcgcacgactcgaacccgtcgcgatcggcggcgtgaccgtcagcaac
gccacccttcataacgaggacgaggttcgccgcaaggacgttcgcatcggcgatacggtg
ctggtccaacgggccggagacgtcattccggaggtggtcaaggtcattgcatccctgagg
accgggaatgaacttccttttgacatgccccggacctgtccgatctgcggcgctgaggca
aaacgcattccaggagaggctgtcacccgatgcatcaacgtcaactgtccagcccagatc
aaggggaaaatccgtcattttgccgccaaaagcgccttcgacatcgatggactgggaagt
aagcttatccaccagttggtggatcgacaattgatccgctcctatgcggacattttccat
ctggatgaagctgtcttgtcgcagctcgatcgaatgggacccaaatccgccggaaatctg
gtcaaggccattcaagccagtcggcgccttcccctttcccgttttctatatgcccttggc
atccgtcatgtcggtgaaaacaccgccgaaatcctggcccgacaatttaaaacccttgac
cgtctcacggcggcatccaccgaagagttggcccggatcgacgggatcggattggagatt
gccggcgctgtacggcatttttttgaccagaaggaaaaccaggaagctgttcagcgattg
ctgaaaagcggtgtctctcttataatgacggatgatccggcatcgggccgcctggtgggc
aaaacattcgttctgaccggaacccttgcaagcatgacccgcatagaagcaaaagcacgc
atagaagccgcgggcggcagagtggccgggactatcagccggcagacggattacctcgtt
gtcggcagcaatcccggcagcaagttggccaaagccaagacgctggggattgaaatcatc
gacgagtcggacctgcaaaaccttctgtaa
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