Desulfoferula mesophilus: FAK_13920
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Entry
FAK_13920 CDS
T09861
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dmp
Desulfoferula mesophilus
Pathway
dmp03030
DNA replication
dmp03410
Base excision repair
dmp03420
Nucleotide excision repair
dmp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FAK_13920 (ligA)
03410 Base excision repair
FAK_13920 (ligA)
03420 Nucleotide excision repair
FAK_13920 (ligA)
03430 Mismatch repair
FAK_13920 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmp03032
]
FAK_13920 (ligA)
03400 DNA repair and recombination proteins [BR:
dmp03400
]
FAK_13920 (ligA)
Enzymes [BR:
dmp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FAK_13920 (ligA)
DNA replication proteins [BR:
dmp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FAK_13920 (ligA)
DNA repair and recombination proteins [BR:
dmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FAK_13920 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FAK_13920 (ligA)
MMR (mismatch excision repair)
DNA ligase
FAK_13920 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FAK_13920 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
DNA_ligase_ZBD
PTCB-BRCT
RUBY_RBDX
HHH_3
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
BEQ14326
LinkDB
All DBs
Position
complement(1554713..1556836)
Genome browser
AA seq
707 aa
AA seq
DB search
MSMTSQQASQRIAELSAELRRYNRLYYLENKSEVADAVYDRKLAELQELEAAFPELALPD
SPTQTVGAPLKSSFAAVRHYQPMLSLESKVEFEVVSDLFKRLDQAGRSDAELLAQPKIDG
LSVELVYRQGLFSVGSTRGDGTTGEDITPNLRTLEDIPDFIADAPERVVVRGEVYMDRTG
FLELNRGLVERGGEGFANPRNAAAGSLRQLDPTVTATRPLKFFPFELSNAEELGFASDSE
ALARLVEWSFPDNAEHQKLGKGPEFIEDFHASYDQNRDGLDFEIDGVVVKVNDLALRREM
GTRSRTPRWAVAWKFPPRQEETEVRDVVVQVGRTGKLTPVALMMPVDVGGVTVSRATLHN
FEIVKNLDVRIGDTVRIVRAGDVIPKVVEVVKQGQPRGALLEPPEKCPVCGTPVEQAQKV
VRHTKKGTEREVGANHICPNHISCPAQIKGALRHYSSRGAMDIESLGEKRVVQLMDQGLL
TDLLSLYHLAEHRQELESLEGWGALSADNLLKSIEATRGAPLARFLYALGIPNVGEATAR
DLANELGSYQRVTQASPEELVAVPGVGPEVARGVVKFFGLEQSRRMADALAAEVKPAEVQ
GAGQKRDLPWQGLSVVFTGALEGLSREEASEMVRALGGKVSSSVSAKTSLVVLGADPGSK
ADKARDLGVETIGLEEFRRRVAQASGQKAPAAPSDSPGPLFAPREER
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgaccagccaacaggcctcccagcgcatcgccgagctgtcggccgagctgcgc
cgttacaaccgcctctactatctcgaaaacaaaagcgaggtggccgacgcggtctacgac
cgcaagctggccgagctgcaggagctggaagccgccttccccgagctggccctgcccgac
tcccccacccagaccgtgggcgcgcccctcaagagcagcttcgcggcggtgcgccactac
cagcccatgctctccctggagtccaaggtggagttcgaggtggtgagcgacctgttcaag
cggctggaccaggccgggcgctccgacgccgagcttttggcccagcccaagatcgacggc
ctgtcggtggagttggtctatcgccaggggctgttcagcgtgggctccacccgaggcgac
gggaccaccggcgaggacatcacccccaacctgcgcactctggaagacatcccggatttc
atcgccgacgcccccgaaagagtggtggtgcgcggcgaggtgtacatggaccgaacgggc
tttttggagctcaaccggggcctggtggagcgcggcggcgagggtttcgccaacccgcgc
aacgcggccgccggcagcctgcgccagctcgatcccacggtaaccgccacccgccccctg
aagttctttccctttgagctgagcaacgccgaggagctgggcttcgccagcgactccgag
gccctggcccgcctggtggaatggagcttccccgacaacgccgagcaccagaagctgggc
aaaggccccgagttcatcgaagacttccacgcctcctacgaccagaaccgcgacgggctt
gatttcgagatcgacggggtggtggtcaaggtcaacgacctggccctgcgccgggagatg
ggaacccgttcgcgcaccccgcgctgggccgttgcctggaagttcccgccccgccaggag
gagaccgaggtgcgcgacgtggtggtccaggtggggcgcaccggcaagctcacccccgtg
gccctgatgatgcccgtggacgtgggcggggtcacggtgagccgggccaccctgcacaac
ttcgagatcgtcaagaaccttgacgtgcgcattggcgacacggtgcgcatcgtgcgcgcc
ggcgacgtgattcccaaggtggtggaggtggtcaagcagggccagccgcggggtgccttg
ctggagcccccggaaaagtgcccggtgtgcggcacgccagtggagcaggcgcaaaaagtg
gtgcgccacaccaaaaagggaaccgagcgcgaggtgggggccaaccacatctgccccaac
catatctcctgccccgcccagatcaagggggccctgcgccactactccagccggggggcc
atggatatcgaaagccttggcgagaagcgggtggtgcagttgatggaccagggcttgctc
acggacctgctttccctctaccacctggccgagcaccgccaggaattggaaagcctggaa
ggctggggagcgctgtccgccgacaatctgctcaaatcaatcgaggccacccgaggagcc
cccctggcccgcttcctttacgcgctgggcatccccaacgtgggcgaggccacggcgcga
gatctggccaacgaactgggcagctaccaacgggtgacccaggccagcccggaggaattg
gtcgcggtgccgggagtggggcccgaggtggcgcggggcgtcgttaagtttttcgggctg
gagcaaagccgccgcatggccgacgccctggccgccgaggtcaagccggccgaggttcag
ggcgcggggcaaaaacgcgacctgccctggcagggcctgagcgtggtcttcaccggggct
ctggagggcctgagccgggaggaggccagcgagatggtgcgcgccctgggcggcaaggtc
agctccagcgtcagcgccaaaaccagcctggtggtgctgggggccgaccccggttccaag
gcggacaaggcccgcgacctgggggtggagacaatcggcctggaggagttccgccgccgg
gtggcccaggccagcggccaaaaggccccggccgcgccctccgattcgccgggccccttg
ttcgccccgcgggaggaacgatga
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