Desulfitobacterium metallireducens: DESME_04695
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Entry
DESME_04695 CDS
T03599
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dmt
Desulfitobacterium metallireducens
Pathway
dmt03030
DNA replication
dmt03410
Base excision repair
dmt03420
Nucleotide excision repair
dmt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DESME_04695
03410 Base excision repair
DESME_04695
03420 Nucleotide excision repair
DESME_04695
03430 Mismatch repair
DESME_04695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmt03032
]
DESME_04695
03400 DNA repair and recombination proteins [BR:
dmt03400
]
DESME_04695
Enzymes [BR:
dmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DESME_04695
DNA replication proteins [BR:
dmt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DESME_04695
DNA repair and recombination proteins [BR:
dmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DESME_04695
NER (nucleotide excision repair)
GGR (global genome repair) factors
DESME_04695
MMR (mismatch excision repair)
DNA ligase
DESME_04695
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DESME_04695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
HHH_3
RNA_lig_T4_1
Cdd1
Ten1_2
BCDHK_Adom3
RNA_ligase
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AHF06436
UniProt:
W0EBJ2
LinkDB
All DBs
Position
937182..939233
Genome browser
AA seq
683 aa
AA seq
DB search
MADDQQKEQPKFDESQLFQRLQELKERIQEANYQYYGLDQPKLTDAEYDALMQELLALEK
AHPEWKTSDSPSQRVGGYIAKEFPKIRHAEPLLSLDNAFNAGDLQEFDRRVRMVAPQAEY
VVELKIDGLTVALTYEDGVLVRGATRGDGEVGEEITANARTISTIPLRLRKPLSRLDVRG
EGYMPKSSFAQLNQEREEAGLSTFANPRNAAAGSLRQQDSKITAQRRLSYFAYQVLTPEG
TELASQTEVLSFLQEQGFIVNPEFKIFSTIEDVIGYCEEMAEKRHTFIYDIDGLVIKVND
MAQQRELGFTAKSPRWAIAYKFPAEQVETVVESIEIRVGRTGVLTPTANLTPVLVAGSTV
SRATLHNIDNIRDKDIRIGDHVLLQKAGDVIPEVVRSLPEKRTGMELVFEMPEYCPYCHS
PVIREEGEAAHRCTSISCPAQQREAIIHFVSRDAMNIDGLGPAVIVQLLEAKLIQDASDL
YTLKFEDLVELERMGKKSAENLLKAIEESKGRGLAQLLFALGIRHVGAKAGKILSQQFRS
MEALEQAKLEELQSIPDIGPTMAQSILRFFQQDSSQRFLAKLLEARVIMTAEESSHPQIF
AGKSIVVTGSLEHYDRQGIESLIEAYGGKAASSVSKKTAFVVAGEKAGSKLAKAKELGVP
VLSEEEFTKLLEKENGKAVESND
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgatcagcaaaaagagcaaccaaagtttgatgagtctcaactgtttcaacgt
ctgcaagagctgaaagagcggattcaagaagcaaattatcagtattacggactcgatcaa
cctaagttaacagatgctgaatatgatgctttaatgcaggaactgcttgctctcgaaaaa
gcccatccagaatggaaaacttcagattcaccctcccaaagagttgggggatatatcgcg
aaagaatttccgaaaattcgtcatgctgaaccgttattgagcttagataatgcctttaat
gctggagatttacaagaatttgaccggcgagtacgcatggttgcacctcaagcggagtac
gtcgttgaactcaaaatcgatggtttaactgttgctcttacgtatgaagacggagtgctg
gttcggggtgctacacgtggtgacggtgaagttggcgaggaaattaccgccaatgcgcgg
acaatatccacaatccctttgcgtttgcgcaaacctctctctcgtttagatgttcgtggg
gaagggtatatgccaaaatcatcatttgctcagcttaaccaagagcgggaagaagctgga
ttatccacctttgctaatccgcgcaatgcggctgctgggtccttacggcaacaggattcg
aaaattacagcccaacggcggctcagttattttgcgtaccaagttctgactcctgagggg
acagaactagcgtcacagactgaggtgttgagcttcttgcaagagcagggtttcattgtg
aatcctgaatttaagatattcagcacgattgaagatgtaattggttattgtgaagagatg
gcggaaaaacgccatacctttatttatgatattgatgggcttgtgattaaagtgaatgat
atggctcagcaacgtgaacttggatttacggcgaaaagcccccgttgggcgattgcttat
aaatttccggctgaacaagtagaaactgtggttgaaagtattgaaattcgtgtcggacgg
accggagtactcacaccgacggccaatctaacgcctgttttggtcgcaggttcaaccgtt
agtcgagctacgttacataatattgataatattcgggataaggatattcggattggcgac
catgtcctgctgcaaaaagcgggagatgtcattcccgaagtggttcggtctttgcctgaa
aaacggacggggatggaactggtttttgaaatgccagagtactgcccttattgtcatagc
ccggttatccgagaagaaggagaggcggcacaccgctgtaccagtatttcttgtcctgcc
cagcaacgtgaagcgatcattcattttgtctctagagatgcgatgaatatcgacgggtta
ggacccgccgttattgttcaacttttagaggctaaacttattcaggatgcgtcagatctc
tataccttaaaattcgaagacttagttgaactcgagcggatggggaaaaagtcagcagaa
aacctgcttaaagcgatcgaggaaagcaagggacggggattggcgcagttgctctttgct
ttaggaattcgacatgtcggagcgaaagcaggaaaaatcctttctcaacagttccgaagc
atggaagccctggaacaggcaaaattggaagagttacaaagcattcctgatatcggcccc
acgatggcacaaagcattcttcgctttttccaacaagatagttcacagcgttttttagcc
aagttgcttgaggccagagtgataatgacagctgaggaatcaagtcatccgcaaattttc
gccgggaaaagcattgtggtcacaggttccttagaacattatgatcgccaaggaatcgag
agcttaatcgaagcttacggaggaaaggccgccagcagtgtcagtaaaaagaccgctttt
gttgtcgctggagaaaaagctggttcaaaacttgcaaaagccaaggaacttggagtccct
gtgcttagcgaagaagaatttacaaagctcttggagaaggaaaacggaaaagctgttgag
agtaacgattaa
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