Dehalococcoides mccartyi CG1: X792_02905
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Entry
X792_02905 CDS
T03647
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dmx
Dehalococcoides mccartyi CG1
Pathway
dmx03030
DNA replication
dmx03410
Base excision repair
dmx03420
Nucleotide excision repair
dmx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dmx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
X792_02905
03410 Base excision repair
X792_02905
03420 Nucleotide excision repair
X792_02905
03430 Mismatch repair
X792_02905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmx03032
]
X792_02905
03400 DNA repair and recombination proteins [BR:
dmx03400
]
X792_02905
Enzymes [BR:
dmx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
X792_02905
DNA replication proteins [BR:
dmx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
X792_02905
DNA repair and recombination proteins [BR:
dmx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
X792_02905
NER (nucleotide excision repair)
GGR (global genome repair) factors
X792_02905
MMR (mismatch excision repair)
DNA ligase
X792_02905
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
X792_02905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_pol_A_CTD
5_3_exonuc
BRCT_2
Zn_ribbon_RRN7
PP_kinase_C_1
Motif
Other DBs
NCBI-ProteinID:
AII57736
LinkDB
All DBs
Position
complement(527251..529284)
Genome browser
AA seq
677 aa
AA seq
DB search
MFSPRTEIENLRREINRHNQLYYVQDNPEISDSEYDVLLRRLKELEEAHPELVTADSPTQ
RVGAEPLKAFGIVNHPYPLLSLANAFSDEELEAWYLRVKKLLGNAAFQIDCEPKMDGLAV
ALTYRNSKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVYLPKEGFA
KLNRERADKGLSLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYAEDSLLPDSHWQI
LEYFSRLGFRINPRNRLVNTLEEAKEYYREMAENRDSLPYEADGVVFKVDSVSLQQKLGD
AGREPRWAIAYKFPAEQVTTLLKKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLHNED
DILRKDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETLFNPKLSRPACPVCG
GEIYRPAGEAMHYCANVSCPAQFERQLEHFVSRGAMDIRGIGESLSVILAQQGLVKNVSD
LYYLTAADLLKLPRMGEKSADNIIKAIADSKTRPLDRVIFGLGIRHVGNETAALLSSRYG
DIWALAGAGLDELQTIPDIGAKIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSHKP
LPLSGVEFVVTGKLESLSREEAQQKIRSLGGTAKDNVTNATRYLVVGADAGSKLAKARSM
GVKELSEQEFINMLEQS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgttttccccccgaactgaaatagaaaacctgaggcgtgaaataaaccgccataaccaa
ttgtattacgttcaggataaccctgaaatctctgattccgaatatgacgtcttgctccgc
cgtctgaaagaactggaagaagcccaccctgagcttgttacggcggactcacccacccaa
agagtgggtgccgagccgctaaaggccttcggcatcgtcaatcacccctatccgctgctt
tccctggcaaatgccttttcagatgaggaactggaagcatggtatctgagggtaaaaaaa
ctgctgggaaatgccgcttttcagatagactgcgaacccaaaatggacgggctggcagtt
gcacttacctaccgaaacagcaagtttaccaccggtgctacccggggtgacggctttcag
ggcgaaaatattacccgaaacctgagaactatccattctatacccttaaataccgaggag
gacgccccccctgtttttgaaataaggggggaagtgtatcttccaaaagaaggcttcgcc
aaactcaaccgtgaaagggctgataaaggactatccctttttgccaacccccgcaatgcc
gccgccggttcactccgccagcttgacccgtcagtaacggccgaaagaccgctggatata
tttatttatgctctggggtatgcggaagacagcctgctgcctgacagccactggcagata
ctggagtacttcagccgcctgggtttcaggataaacccgcgtaaccgtctggtaaacacc
ctggaagaagccaaagaatactaccgtgagatggcggaaaaccgggattccctgccctac
gaagcagacggggtagtattcaaggtagattccgtatccctgcagcaaaaactgggggat
gcgggacgtgaaccccgctgggctatcgcctataaatttccggccgaacaggtcactacc
ctccttaaaaaaataggcatatcggtaggccgtaccggcactttaaacccgtatgccatc
cttgaaccggtaaatgtaggcggggtagtggtaaaacaggccagtttgcataacgaagat
gatatcctccgcaaggatatccgtgaaggggatacggtagtaatccagcgggcaggcgaa
gtaatacctgaggtagttgccccggtgctggctaaacgcagccccgaatcaaaacccttc
agcatggaggaaaccctgtttaaccccaaacttagccgcccggcctgcccagtgtgcgga
ggggaaatataccgccccgcaggcgaggctatgcactactgtgccaacgtttcctgcccc
gcccagtttgaacgccagctggaacactttgtctccagaggggctatggatatccgcggc
atcggcgaaagcctgagcgtgatactggcacaacagggattggtcaaaaacgtatctgac
ctttactacctgactgcggctgatttactgaaactgccgcgcatgggtgaaaaaagtgcg
gataatataataaaagctattgcagacagcaaaacccgcccgctggacagggtaatattc
gggctgggtatccgccacgtggggaatgagacagccgctttgctatccagccgctacggg
gatatatgggcactggctggggcagggcttgatgaactgcaaaccataccggatataggt
gccaagatagccagcagcataaaagcctatttcagcgaagaaaaaaacatagcggtcatc
cgccgtttggaaacagccggagtaaagcttgcttcagaccaaaagccctcacataaacct
ctgccgctttccggagtggagtttgtagttaccggcaaactggaaagtttaagccgcgaa
gaagcacagcaaaaaatccgctcacttggcggcacggccaaggacaatgtcaccaacgca
acccgctatctggtggtaggtgctgatgccggctccaagctggccaaagcccgcagtatg
ggggtaaaagagctgtccgaacaggaatttataaatatgctggagcaatcttga
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