Dehalococcoides mccartyi CG5: X794_02390
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Entry
X794_02390 CDS
T03649
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dmz
Dehalococcoides mccartyi CG5
Pathway
dmz03030
DNA replication
dmz03410
Base excision repair
dmz03420
Nucleotide excision repair
dmz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dmz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
X794_02390
03410 Base excision repair
X794_02390
03420 Nucleotide excision repair
X794_02390
03430 Mismatch repair
X794_02390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmz03032
]
X794_02390
03400 DNA repair and recombination proteins [BR:
dmz03400
]
X794_02390
Enzymes [BR:
dmz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
X794_02390
DNA replication proteins [BR:
dmz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
X794_02390
DNA repair and recombination proteins [BR:
dmz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
X794_02390
NER (nucleotide excision repair)
GGR (global genome repair) factors
X794_02390
MMR (mismatch excision repair)
DNA ligase
X794_02390
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
X794_02390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
HHH
BRCT_2
zf-RRN7
Motif
Other DBs
NCBI-ProteinID:
AII60695
LinkDB
All DBs
Position
complement(445309..447342)
Genome browser
AA seq
677 aa
AA seq
DB search
MFSPLIEVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELVTPDSPTQ
KVGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLGNISFQIDCEPKMDGLAV
ALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNGFA
KLNRERADKGLPLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHWQI
LDYFSKIGFRINPLNRLVNTMEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHRLGD
VGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHNED
DILRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNPNLNRPACPVCG
GEIYRPAGEAMHYCTNVSCPAQFERQLEHFVSRGAMDIRGIGESLSVILAQQGLVKNVSD
LYYLTTADLLQLPRMGEKSADNIIDAIADSKTRPLDRVIFGLGVRHVGNETATLLSRHYG
NIWALAKTGLGELQTIPDIGDKIASSIVAYFSEEKNVAVIRRLEEAGVRLTSDQKPVNKN
MPFSGMEFVVTGKLESFSREEAQEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKARSM
GVKELSEREFINMLEQS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgttttcccccttgattgaagtagaaaacctaaggcgtgaaataaaccgccataaccag
ctatattacgttcaggataatcctgaaatctctgatgcccagtatgacactctaatccgc
cgcctgaaagaactggaggaagcccaccccgaactggttaccccggactcacccacccaa
aaagtcggggcagagccgcttaaagctttcgggattgtaaaccacccttatccgttactt
tctctggcaaatgctttttcagatacagaactggaagcttggtaccagcgggtaaagaaa
ctgctgggtaatatttcttttcagatagactgcgagcccaaaatggacggcctggcggta
gcccttacctaccggaacggaaaatttgcaaccggtgctacccggggtgacggatttcag
ggtgaaaatattacccgaaacctgcggactatccattccataccattaaacgccgaacca
aacgcaccccctgtttttgaagtaaggggtgaagtatatctttccaaaaatggcttcgcc
aaactcaaccgcgaaagggcggataaagggctgcctctttttgccaacccacgcaatgcc
gccgccggttcactccgccagcttgacccgtcagttacggccgaaagaccgctggatata
tttatttatgctttaggatattcagaagacagcctgctgcctgacagccactggcaaata
ctggattatttcagcaaaattggctttaggataaatccacttaaccgcttggtaaacacc
atggaagaagccaaagaatattaccgccagatggcagcaaaccgggcttcactgccttat
gaagcagacggagtagttttcaaggtggactccgtctctctgcaacaccggctgggggac
gtaggtcgtgaaccccgctgggccatagcctataaattcccggctgaacaggtcatgacc
cgcctgaagaaaataggcatatctgtaggccgtacaggtacattaaacccctttgccgta
cttgagccggtaaatgtgggcggagtagtggtaaaacaggccgccctgcataatgaagat
gatatactccgcaaagatatccgcgaaggagatacggtcattatccagcgggcaggtgaa
gtaatacctgaggtagttgcaccggtactgagtaaacgcaaccccgaatcaaaacccttc
agaatggaagaatctctgtttaacccgaaccttaaccgccctgcctgcccggtgtgcggc
ggggaaatataccgccccgcaggcgaagctatgcactactgtaccaacgtttcctgcccc
gctcagtttgaacgccagcttgaacattttgtttccagaggggctatggatatacgcggt
atcggcgaaagcctaagcgtaatactggcacagcaggggctggtgaaaaacgtatcggac
ctgtactacttgaccaccgctgatttactgcaactgccgcgtatgggtgaaaaaagtgcg
gataatataatagacgccattgcagacagtaaaacccgcccgctggatagggtaatattc
ggtctgggtgtacgccacgtgggcaacgagaccgccaccctgctctcaagacactacggg
aatatatgggcactggctaaaaccggtcttggtgaactgcaaactatacctgatatcggt
gacaaaatagccagcagtatcgtagcgtatttcagcgaagaaaaaaatgtggctgttatc
cgccgtctggaagaagcaggcgtacggcttacttcagaccagaaaccggtaaacaaaaat
atgccattttccggcatggagtttgtagtcaccggcaagctggaaagtttcagccgcgaa
gaagcacaggaaaaaatccgctcactcggcggtacagccaaggataacgtcaccaaagca
accagctatttggtagtgggtgcagatgccggctccaagctggccaaagcccgaagtatg
ggtgtaaaagagctttccgaacgggaatttataaatatgctggagcaatcttga
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