Dichelobacter nodosus: DNO_0389
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Entry
DNO_0389 CDS
T00517
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dno
Dichelobacter nodosus
Pathway
dno03030
DNA replication
dno03410
Base excision repair
dno03420
Nucleotide excision repair
dno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DNO_0389 (ligA)
03410 Base excision repair
DNO_0389 (ligA)
03420 Nucleotide excision repair
DNO_0389 (ligA)
03430 Mismatch repair
DNO_0389 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dno03032
]
DNO_0389 (ligA)
03400 DNA repair and recombination proteins [BR:
dno03400
]
DNO_0389 (ligA)
Enzymes [BR:
dno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DNO_0389 (ligA)
DNA replication proteins [BR:
dno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DNO_0389 (ligA)
DNA repair and recombination proteins [BR:
dno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DNO_0389 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DNO_0389 (ligA)
MMR (mismatch excision repair)
DNA ligase
DNO_0389 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DNO_0389 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF7340
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ABQ13642
UniProt:
A5EVZ5
LinkDB
All DBs
Position
complement(432437..434473)
Genome browser
AA seq
678 aa
AA seq
DB search
MAQNSSLIAAELEALRQTIRAHEYAYYVLEAPNIADSEFDALMQKLRALEAASGLPIPAD
SPTQRVGGKADNRFRNVAHHIAMLSLDNVFNADEFADFYRRLQEQLSPTTAISLIAEPKF
DGLAINLRYENGILQRASTRGDGITGEDVTQNVRTISTIPLRLNTHTPPDVIEIRGEIYM
PKKAFYALNEQAAANGEKIFANPRNAASGSLRQLDPRITARRQLAFFAYGYGEITNYQLP
ETYEALLEQYRAWHIPVCSLHQKAATLPEALAAYQQFAKQREQLPFDIDGVVFKVNRFAD
QQRAGFLARAPRWAIAWKFPALEKTTRIEAIELQVGRTGAVTPVARLQPVTIAGVVVRSA
SLHNAREIARKDIRVGDTIFIRRAGDVIPEVVSVVLEKRLPDAPVFAMPEHCPVCAAAIV
QNEDEAVARCSGGLHCPAQRVAALIHFASREALDIRGLGEKLIQQLVAQEFVRTPADLFC
LTADDWASLPRMGKKSAHNVMTAIDAAKKTTLARFIYALGIRGVGSVNAQALAAHFGDLA
AFMAADRAALQEIEGIGDVVAADIEHFFADEDNRAVIAAIVAAGVHWSTELTKKIIDAPL
LGKTVVITGTLPSLSRAEAQKRLETLGAKVTSQVSRQTDFLLLGADAGSKLARAQAFSVP
IIDEAQLQTWWQHYGNAV
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaaactcctcattaatcgctgctgaattggaagcgttgcgccaaacaatccgc
gctcatgaatatgcttattacgtgctcgaggcgccgaacattgccgatagcgaatttgat
gcattaatgcaaaaattgcgcgcgctcgaagcggcaagcggtttgcccattcccgcggat
tcgccgacgcagcgcgttggcggtaaagctgataatcgttttcgaaacgtcgcccatcac
attgccatgctttctttggacaacgtttttaatgccgatgaatttgcggatttttatcgc
cgtttacaagaacaattatcgccgacaaccgcaatttctttgattgccgaacccaaattt
gacggactcgcgatcaatttgcgctacgaaaacggcattttgcaacgggcgagtacccgc
ggcgacggcatcaccggcgaagacgtcacgcaaaacgtgcgcaccatcagcacaattccg
ctgcgtttaaatacgcatacgccgcccgacgttatcgaaattcgcggcgaaatttatatg
ccgaaaaaagcgttttacgcgcttaatgaacaagccgctgctaatggtgagaaaattttt
gctaatcctcgaaatgccgcttccggcagtttgcggcaactcgatccgcgcatcacggcg
cggcggcaactcgctttttttgcttatggttacggggaaatcacaaattatcaattaccg
gaaacgtatgaagcgttgctcgagcaatatcgcgcgtggcatattcccgtatgttcttta
catcaaaaagcggcaactttaccggaagcgctggcggcttatcagcaatttgcgaaacaa
cgcgaacaattgccatttgacattgatggcgttgtttttaaagtcaatcgttttgctgac
caacaacgcgcgggctttttagcgcgggcgccgcggtgggcaattgcgtggaaatttcca
gcgctggaaaaaactacgcgcattgaagcaattgaattacaagtgggacgcacgggcgcg
gtgacgccggtggcgcgtttgcagccggtcacgattgccggcgttgtggtgcgtagcgcc
agtttgcataacgcgcgggagattgcgcgcaaagatatccgcgtgggtgatacgattttt
attcgccgcgctggtgatgtaattccggaagtggttagcgtggttttggagaaacgtttg
cccgatgcgccggtttttgcaatgcccgaacactgccccgtttgcgcggcagcaattgtg
caaaatgaagatgaggcggtggcgcgttgtagcggtggtttacattgtccggcgcaacgc
gtggcggcgttaattcattttgcttctcgtgaggcgctcgatattcgcggtttgggcgaa
aagttaattcagcaattggtcgcgcaagaatttgtgcgcacgccggcggatttgttttgt
ttaacggcagacgattgggcaagtttaccgcgcatgggtaaaaaatccgcgcacaatgta
atgacggcaatcgatgctgcgaaaaaaaccacgttggcgcgttttatttatgctttgggt
attcgcggcgtgggaagcgttaatgcgcaggcgttggcggcgcattttggcgatttggca
gcgtttatggcggctgatcgcgcggcgttgcaagaaattgagggcattggcgatgtggtc
gcggcggatatcgaacatttttttgcagatgaagataatcgcgcggtaattgcggcaatt
gtggctgccggcgtgcattggtcaacagagctgacaaaaaaaataatagatgcgccgctt
ttgggaaaaacggtggtgattacgggcactttgccgagtttatcgcgcgcggaagcgcaa
aaacgtttggaaactttgggcgcaaaggtgacgtcgcaggtttcgcggcaaacggatttt
ttattattaggcgctgatgccggcagtaaattggcgcgggcgcaggcgttttccgtgccg
attattgatgaagcgcagttgcaaacgtggtggcagcattatggcaatgcggtgtga
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integrated database retrieval system
