KEGG   Dokdonia sp. Dokd-P16: DCS32_09920
Entry
DCS32_09920       CDS       T05432                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
dod  Dokdonia sp. Dokd-P16
Pathway
dod03030  DNA replication
dod03410  Base excision repair
dod03420  Nucleotide excision repair
dod03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dod00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DCS32_09920
   03410 Base excision repair
    DCS32_09920
   03420 Nucleotide excision repair
    DCS32_09920
   03430 Mismatch repair
    DCS32_09920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dod03032]
    DCS32_09920
   03400 DNA repair and recombination proteins [BR:dod03400]
    DCS32_09920
Enzymes [BR:dod01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DCS32_09920
DNA replication proteins [BR:dod03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DCS32_09920
DNA repair and recombination proteins [BR:dod03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DCS32_09920
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DCS32_09920
   MMR (mismatch excision repair)
    DNA ligase
     DCS32_09920
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DCS32_09920
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT Nlig-Ia BRCT_2 HHH Auto_anti-p27 5_3_exonuc PADR1_N Zn_ribbon_Top1
Other DBs
NCBI-ProteinID: AWH74463
LinkDB
Position
2207361..2209355
AA seq 664 aa
MTIEEQILALRNELQTHNHSYYVLDTPTISDFDFDQKLKQLEALEAAHPEFDDPNSPTHR
VGGAVTKNFETIVHEHRMYSLDNSYSKEDLEDWEARVKKMVDGEVNYTCELKYDGASISL
TYENGELLKAVTRGDGLQGDDVTTNIKTIKSVPLKLKGDYPTRFDIRGEIVLPWEGFHAM
NAEREELGFELYRNPRNTASGSLKLQDSAEVARRPLQCLLYNITGNNLGIATQMDSLQKA
RDWGFRVPEAAKLAKNIDEVLEFINHWDVARHDLPYETDGVVVKVNGLQQQEELGYTAKA
PRWAMAYKFKAEQVSTRLREITYQVGRTGAITPVANLEPVELAGTTVKRASLHNADQIER
LDIREGDEVFVEKGGEIIPKIIAVDLTKRPADSESTTYITECPECSTPLVRKEGEAQHYC
PNDMGCPTQIIGRIQHYISRKAMDIDGLGGETVALLVNEGLIVNYADLYELTVAQLLPLE
RMAQKSAENLVSGVQASVQIPFEKVLFGLGIRYVGETVAKKLAKHYKSIDAIISATEEEL
VAVDEIGSKIAESVVAFFAKAEHITLIERLKSYGVQLEISAEKLANQSDKLAGYIFVVSG
VFEMPRNELKKLIEDNGGKVSSSISSKTTYVVAGDKMGPSKLQKAESLGVTIISEEEFLN
LVVG
NT seq 1995 nt   +upstreamnt  +downstreamnt
atgacaatagaagagcaaatactcgctttacgcaacgaattacaaacacataatcatagc
tattatgtgctagatacaccaacgatatcagattttgactttgatcaaaagctgaagcaa
ctggaagcgctagaagctgctcatccggaatttgacgaccctaactcgcctacgcatcgt
gtaggtggagcggtgactaaaaattttgagactattgtacatgagcacagaatgtactct
ctggataactcatattcaaaagaagatcttgaagattgggaagcgcgcgtaaagaaaatg
gtagatggagaggttaactatacctgtgagctcaaatatgacggagcctcgataagtctt
acttatgaaaatggtgagttgctcaaagcggttactcgaggagatggtttgcaaggagat
gatgtgaccacaaatattaaaacaataaagtcggttcctttgaaattgaagggtgattat
cctacaagatttgacatacgaggagagatagtattgccatgggaaggttttcatgctatg
aatgcagagcgtgaagagctaggttttgagctctatcgcaatccaagaaacacagccagc
ggatctttaaaattacaagatagtgctgaggttgctagaagaccactgcaatgcctatta
tataatattacaggaaataatctaggtattgctacccagatggatagcctgcagaaggct
cgagattggggtttccgcgttcctgaggcggcaaaactggcaaagaatattgatgaggta
ttagaatttatcaatcactgggatgtggcaaggcatgacttgccttatgagacagatggt
gttgtggtaaaagtcaatggattacaacaacaagaagaactaggttatacagcaaaggct
ccgcgatgggcaatggcgtataaatttaaagcagaacaagtttctacacgcttacgcgaa
ataacataccaagtaggtcgcacaggagccatcacaccagttgcaaacctggaacctgtt
gaacttgcgggaacgaccgtgaagcgagctagcttgcataatgcagatcagatagagcga
ctagatatacgagaaggtgatgaggtatttgtagaaaaaggcggcgagattattccaaaa
attatagcagtagatcttacaaagcgcccagcagattctgaatctacaacatatattact
gagtgtccagaatgtagcacgccgctagtgcgtaaagaaggtgaggcacagcactattgc
ccgaatgacatgggctgtcctactcaaattataggtagaatacagcattacatctctaga
aaggcaatggatattgatggtctaggaggggaaaccgtagcactcttagtaaacgaaggg
ctgattgtaaattatgcagatttatatgagcttacggtagcgcaattattaccactagag
cgtatggctcaaaaaagtgccgaaaatctagtaagcggagtgcaagcctcggtgcagatt
ccttttgagaaggtgttgtttggtctagggattaggtatgtaggtgagactgtggccaaa
aaacttgcaaaacattacaaatctatagacgctattatttcggcaacagaggaagagctg
gttgcggtagatgaaataggaagtaagattgcagaaagtgtagtagcatttttcgcgaaa
gcggaacatattacactcatagagcgtttaaaatcttacggagtacagttagaaatttct
gcggagaaacttgccaatcaatctgacaaactagcgggatacatatttgtagtgtctggt
gtttttgaaatgcctcgcaacgaattgaaaaagttaatagaagataatggcggtaaagtg
tctagttctatttctagtaaaacaacctacgttgtggctggagataagatgggtcctagt
aaattgcagaaggcagaaagtctaggagtgactattatttctgaggaagaattcttaaat
ttagttgttggataa

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