Denitratisoma oestradiolicum: DENOEST_1007
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Entry
DENOEST_1007 CDS
T06737
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
doe
Denitratisoma oestradiolicum
Pathway
doe03030
DNA replication
doe03410
Base excision repair
doe03420
Nucleotide excision repair
doe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
doe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DENOEST_1007 (ligA)
03410 Base excision repair
DENOEST_1007 (ligA)
03420 Nucleotide excision repair
DENOEST_1007 (ligA)
03430 Mismatch repair
DENOEST_1007 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
doe03032
]
DENOEST_1007 (ligA)
03400 DNA repair and recombination proteins [BR:
doe03400
]
DENOEST_1007 (ligA)
Enzymes [BR:
doe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DENOEST_1007 (ligA)
DNA replication proteins [BR:
doe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DENOEST_1007 (ligA)
DNA repair and recombination proteins [BR:
doe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DENOEST_1007 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DENOEST_1007 (ligA)
MMR (mismatch excision repair)
DNA ligase
DENOEST_1007 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DENOEST_1007 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CAB1368172
UniProt:
A0A6S6XZ55
LinkDB
All DBs
Position
I:1032448..1034493
Genome browser
AA seq
681 aa
AA seq
DB search
MNVAERARVLREEIERHNRSYYVLDSPTVPDAEYDKLFRELQDLEVSHPELRTPDSPTQR
VGGAPLPAFGQVRHRIPMLSIRTETDTEASGAIAFDARIRRELGLGESDPPVEYAAELKF
DGLAVNLRYEDGLLVQAATRGDGETGEDVTQNVRTIRQIPLRLIGQAPAVLEVRGEAFIR
RPDFERYNERQRMQGKPALVNPRNGAAGSIRQLDPTLCAQRPLSFFAYGLGEVESWAQPE
THGAVLDALSALGLPVCEHRAVVQGAEGLAAFHRNMGDRRDSLPFDIDGVVYKVNSLALQ
QRLGFVTREPRWAVAHKYPAQEMLTTVEAIEVQVGRTGAITPVARLAPVFVGGVTVTNAT
LHNFEEVERKDVRVGDTVIVRRAGDVIPEVVSVVLERRPMKDLFGGEPLHERFPMPTACP
ECASAIEKPEGEAIARCTGGLYCPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVDDGLVH
TAADLYVLSKEKLAGLERMADKSAQNLRDAIDRSRNTTLARFIFALGIRNVGEATAKDLA
RYFGGLDALLVASEEQLQQVPDVGPVVAASLAHFFAQPHNLEVIDLLRKAGVQWSEEEAS
AQVASAIAGKTFVLTGTLPTLSRDQAKELIEARGGKVSGSVSSKTHYVVAGAEAGSKLDK
ARALGLPLLDEAGLLALLAGS
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtggcggagcgcgcccgcgtcctgcgggaggaaatcgagcgccacaaccgctct
tactacgtcctcgactcgcccacggttcccgatgccgagtacgacaagctgttccgcgaa
ctccaggacctggaggtatcccatcctgaactgcggacgccagattcaccgacgcaacgg
gtgggtggcgcgcctctgcccgccttcggccaggtgcggcaccggataccgatgctctcg
atccgcaccgagaccgataccgaggccagcggcgccatcgccttcgatgcgcgtatccgg
cgggaactgggactgggggagtccgacccgccggtggaatacgcggcggagctcaaattc
gacggcctcgccgtcaatctgcgctacgaggacggcctgctggttcaggccgccacccgg
ggcgacggcgagaccggcgaggacgtgacccagaatgtccgcacgattcgccagattccc
ttgcgactgatcggccaggcgcctgccgtcctcgaagtccggggcgaggcctttattcgc
cggcctgacttcgagcgctacaacgagcgccagcggatgcaaggcaagccagcgctggtc
aatccccgcaatggcgcggcaggcagcatccgccagctcgatccgacgctctgcgcccag
cggcccctgtcgttttttgcctatggtctgggggaggtggaaagctgggcacagccagaa
acccatggtgccgtattggatgccttatcggctttggggctacccgtctgtgagcatcgg
gcggtggtgcagggggccgagggcctggcggccttccaccggaacatgggcgaccgccgc
gacagtctgcctttcgacatcgacggcgtggtgtacaaggtcaattcgctggccctgcaa
cagcgcctgggtttcgtcacacgggagcctcgctgggccgtggcccacaagtatcctgcc
caggagatgctgaccacggtggaggccatcgaggtgcaggtgggccgcaccggcgccatc
actccggtggcccggctggccccggtcttcgtcggcggcgtgacggtgaccaacgccacc
ctgcacaacttcgaggaggtggagcgcaaggatgtccgggtcggcgatacggtgatcgtg
cgccgggccggggacgtgattcccgaagtggtgtccgtggtgctggagcggcggcccatg
aaggatctcttcggcggagaacccctgcatgagcgttttcccatgcccacggcctgcccc
gagtgcgcttcggccatcgaaaaacccgagggagaggccatcgcccgctgcaccgggggc
ctttactgcccggcccagcgcaagcaggccctgctgcatttcgccggccgccgcgccatg
gacattgaaggcctgggagacaagctggtggatcaactggtggatgacggactggtgcat
accgccgccgatctctatgtcctgtcaaaggaaaagctggcaggactcgaacgcatggcc
gacaagtcggcgcaaaacctgcgggatgccatcgacaggagccggaatacgaccctggcc
cgcttcatcttcgccctgggaatacgcaatgtgggcgaggccacggccaaggatctggcc
cgctatttcggcggcctggatgccctgctggttgccagcgaggaacaactgcaacaggtg
cccgacgtggggccagtggtggccgcctccctggcccatttcttcgcccagccccataac
ctggaagtcatcgatttgttgcggaaggccggggtgcagtggtctgaggaagaggcatcg
gcccaggtggcatcggccatcgccggcaagaccttcgtcctcaccggcactctgcccacc
ctgtcccgggaccaggccaaggagttgatcgaggcacggggcggcaaggtctccggttcc
gtgtcgagcaagacccattacgtggtggccggcgcggaagccggctccaagctggacaag
gcacgggcgctgggactgcccctgctggacgaggcgggcttgctggccctgctggcgggt
tcatga
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