Desulfobulbus oligotrophicus: HP555_05830
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Entry
HP555_05830 CDS
T06967
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dog
Desulfobulbus oligotrophicus
Pathway
dog03030
DNA replication
dog03410
Base excision repair
dog03420
Nucleotide excision repair
dog03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HP555_05830 (ligA)
03410 Base excision repair
HP555_05830 (ligA)
03420 Nucleotide excision repair
HP555_05830 (ligA)
03430 Mismatch repair
HP555_05830 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dog03032
]
HP555_05830 (ligA)
03400 DNA repair and recombination proteins [BR:
dog03400
]
HP555_05830 (ligA)
Enzymes [BR:
dog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HP555_05830 (ligA)
DNA replication proteins [BR:
dog03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HP555_05830 (ligA)
DNA repair and recombination proteins [BR:
dog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HP555_05830 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HP555_05830 (ligA)
MMR (mismatch excision repair)
DNA ligase
HP555_05830 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HP555_05830 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Auto_anti-p27
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QQG65417
UniProt:
A0A7T5VCP9
LinkDB
All DBs
Position
1301861..1303870
Genome browser
AA seq
669 aa
AA seq
DB search
MEQGAAERLRYLRKQIHLHAHRYYVLDDPIIADGEYDALFRELLSLEKTHPELVTADSPS
QRVGGQPLEAFAPVEHSSPMLGLDNIFSKSEFVEFVEKVHRYLKSDEPVHLIAEPKLDGL
AVELVYRQGVFVLGSTRGDGLVGEDITGQLKTVPAIPLRLLTDDDSAIPEELIVRGEVFL
TKQGFAALNRQREKAGEPLFANPRNAAAGSLRQLDPRITAQRPLSFYVYGIGPPALPGVV
NQETLFVRLRNLGFPVNRLISVCMDLEQVEEHFQHLLSVRHDLDYEIDGMVVKVERLDLQ
QRLGATARAPRWAVAWKFPATQATTTVDAVDFQVGRTGAITPVAHLQPVELNGVIVQRAT
LHNRDEIERKGLMVHDTVLVQRAGDVIPEIVKVVTEMRTGQEQPIIFPQNCPECGQPLIQ
PKGEAVVRCVNRYCPAQQLQKLIHFVGKNGLDVDGLGKKNVEQLVRAECVQTMADFFTLN
KKTLAELNGWGEKSADNVLAAIEEKKSIGLAQLIRALGIRYVGEVTASILADHFVDIYQL
MTAEKEQLLHIEGVGEQIATSVHEYFMDADNRATIRQLLAAGLTVQAVQGGHASLSGRVF
LFTGSLSTLSREEAKQMVKLQGGQVATSISQRVTDVVVGNKAGSKQKKAVELGLSLINEA
EFLQLVPRR
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaacagggagcagccgaacgattgaggtatctgcgaaagcagatccacctgcatgca
caccggtattatgtgcttgacgaccccattattgccgatggtgagtacgatgcactgttt
cgcgagctgctttccctggagaagacgcatccggagctggtgactgccgactctcccagt
cagcgggtcggtgggcagcccctggaagcctttgctccggttgaacattcttctccaatg
cttgggttggataatatcttcagcaaaagcgagtttgtcgagtttgtggaaaaggtgcat
cgataccttaaatccgatgaacctgtgcatctgattgcagaaccaaaacttgatggtctg
gccgtggagctggtgtatcgccagggggtgtttgttcttggatcgacccgtggtgatgga
ctggtcggcgaagacattacaggtcaattaaaaaccgtaccagcgatacccttacgattg
ctgactgatgatgacagcgccatcccggaagagttgatcgtccgcggtgaggtttttttg
acaaagcaggggtttgctgctctgaaccgacaacgggaaaaggctggtgaacctctgttc
gccaacccccgcaacgcggctgccggttctttacggcagctcgaccccaggattactgcg
cagcggcctctttctttttatgtgtacggtattggccctcctgccctgcctggagtcgtc
aatcaggaaactctgtttgtccggcttcgtaaccttggttttcctgttaacaggctgatc
agcgtttgcatggatttagaacaggttgaggagcactttcagcacctgctatcggtaaga
catgatctggattatgaaatcgatggtatggtggtcaaggttgaaagactggatctgcag
caacgtctgggggctacagcacgggctccacgctgggctgtagcctggaagtttccggcc
acacaggccacaacaacagttgacgctgttgactttcaagtcggaagaaccggggcaata
acgccggtggcacatctgcagcccgttgagctcaatggagtgattgtgcagcgggccacc
cttcataatcgggatgagatcgagcggaagggtttgatggtacatgacactgttctggtg
cagcgagctggagacgtgataccggaaattgtcaaagtggtcactgagatgcgtaccggt
caggagcagccgatcatctttcctcaaaactgccctgaatgcggccagcctctgattcaa
ccaaagggggaggctgttgttcgctgtgtcaatcgctactgcccggctcaacagttgcag
aagttgatacactttgtcggtaaaaatgggttggatgtggatggattgggtaaaaaaaat
gttgaacaactggtgcgggcagagtgtgtgcagacaatggcagactttttcacattaaat
aagaagactttggccgaactgaacgggtggggagaaaaatcggctgataatgttttggct
gccattgaggagaaaaagagtatagggctggcacagttgatccgtgctcttggtattcgt
tatgttggagaagttacagcgagcattctggccgaccattttgttgatatttatcagctg
atgaccgctgaaaaagaacagttacttcatattgaaggtgttggagagcaaatagcaaca
tcggttcatgaatatttcatggatgctgataaccgggcaaccatcagacagctgcttgct
gcgggtctaacggtacaggctgttcagggaggtcatgcctcactcagtggtcgggtcttt
cttttcaccggatctttgtccactctttccagagaggaggccaagcagatggtaaagttg
cagggcggacaggtggcaaccagcatcagtcagcgggtgactgatgtggtcgttgggaac
aaagccggtagtaaacagaaaaaggctgtggagcttggtctttcacttatcaatgaagca
gagtttttgcagctggttcccaggaggtga
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integrated database retrieval system
