KEGG   Marivivens sp. JLT3646: BSK21_06925
Entry
BSK21_06925       CDS       T04589                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
don  Marivivens sp. JLT3646
Pathway
don03030  DNA replication
don03410  Base excision repair
don03420  Nucleotide excision repair
don03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:don00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BSK21_06925
   03410 Base excision repair
    BSK21_06925
   03420 Nucleotide excision repair
    BSK21_06925
   03430 Mismatch repair
    BSK21_06925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:don03032]
    BSK21_06925
   03400 DNA repair and recombination proteins [BR:don03400]
    BSK21_06925
Enzymes [BR:don01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BSK21_06925
DNA replication proteins [BR:don03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BSK21_06925
DNA repair and recombination proteins [BR:don03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BSK21_06925
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BSK21_06925
   MMR (mismatch excision repair)
    DNA ligase
     BSK21_06925
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BSK21_06925
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT DNA_ligase_ZBD HHH_2 PTCB-BRCT Zn_ribbon_ISL3 Nlig-Ia Zn_ribbon_NUD Zn_Ribbon_TF
Other DBs
NCBI-ProteinID: APO86781
UniProt: A0AA34SD97
LinkDB
Position
complement(1396844..1399108)
AA seq 754 aa
MGKSVTQSATAIIAVEQLTSDQAVEELARLADVLARANTAYHTEDAPDISDAEYDALKQR
NSAIEARFPHLKRSDSPSEQVGAVVGDGFGKVAHAVRMLSLSNAFDDEDVADFDEQVRKY
LGTDEVIAYTAEPKIDGLSLSLRYENGILVQAATRGDGEVGENVTENAKTISDIPHHITG
APAVIEVRGEVYMSHADFAALNERHAATGGKTFANPRNAAAGSLRQLDAEITRSRPLRFF
AYAWGEVSEPLGETQFDAIERFKVLGFQVNPLTRLCSTIEEIISHYRDIEAQRATLGYDI
DGVVYKVNDLNFQRRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLQ
PVTVGGVVVSNATLHNEDYIAGRDSNGHPIRDGKDIRIGDWVQVYRAGDVIPKIADLDLA
KRPDDAEPFAFPHVCPECGSEAIRDEGDSVRRCTGGLVCPAQAVERLKHFVSRGAFDIEG
LGAKQIEMFHNDPVLPINEPADIFTLAKRDAQNLARLKNRDGFGEKSANKLFEAIEQKRK
IPFGKFLFALGIRHLGEVAGADLARHFVTWDALVRTADAARVAAQCEVLAEEAEAEERAL
AEAQGRRANIKKSRDKVWADCPQEALAAWNEFTSIDGIGAVLAVSLITTLSQPEERAVID
RLVAELDIQAPEQRSTDSPVAGKTVVFTGSLEKMTRAEAKARAESLGAKVAGSVSVKTDL
LVAGPGAGSKAKKAEELGIETIDEDGWLALIGDA
NT seq 2265 nt   +upstreamnt  +downstreamnt
atggggaagagtgtgacgcaatcggccacagcgataatcgcggtagagcagcttacaagt
gatcaagccgtcgaggaattggcgcgactggccgatgtattggcgcgggcaaatacggcc
tatcatactgaagatgcaccagatatttcggatgcggagtatgatgcgctcaagcagcga
aattctgcgattgaggctcgttttcctcatctcaaacgatcagatagcccgtcagagcaa
gttggtgcggttgtcggcgatggttttggcaaagtcgcccacgctgttcgaatgctgtcc
ttgtcgaacgcatttgatgacgaagatgtcgccgattttgatgaacaagtgaggaaatat
ctcggcacggatgaggtgatcgcctacacggctgaaccaaaaattgatgggctttcactg
tcgctccgctatgaaaatgggattttggttcaggcggcgacacgaggcgacggcgaggtc
ggggaaaacgtcaccgagaacgccaagacgatttctgatattccgcatcatatcactggc
gcaccagccgtgatcgaagtccgcggcgaagtttatatgagccacgcggatttcgcggcg
ctcaacgaacgccacgctgcgacaggtgggaaaacctttgcgaacccgcgaaacgcggcc
gcagggagccttcgacaactcgatgcagagatcacacgcagccgtccgcttcggtttttt
gcctatgcatggggtgaggtcagtgaaccgctcggtgagacgcagtttgatgcaatagag
cgatttaaggtgctgggatttcaggtaaatccgcttacgcgactgtgttcgacgatcgag
gaaataatcagccattaccgcgatattgaggcccaacgtgcgacgctcggctacgatatc
gatggtgtggtttataaggttaacgatctgaactttcagcgccgcttggggttccgatcc
acaacgccacgttgggcgattgcgcataagttcccagcagagctggcgtggacacggctt
gaggcgatcgacattcaggttggtcggacgggggctttgtcacccgtggcgcgcctccag
cccgtgactgtgggcggggtcgtagtgtcaaatgccacgctccataacgaggattacatc
gcgggccgtgacagcaatgggcaccccattcgcgatggtaaggacattcgtatcggtgat
tgggtgcaggtctaccgcgcaggcgatgtgatccccaaaattgccgaccttgatttggcg
aaacgtcccgatgatgcagagccgtttgcgttccctcatgtctgtcctgagtgtgggtca
gaggcgatccgcgacgagggcgactcggttcggcgttgcacgggcggtttggtgtgtcct
gcgcaggctgttgaacggctcaagcatttcgtatcgcgtggggcgtttgatatcgaaggg
cttggcgcaaaacagatcgaaatgttccacaatgatccggtgctaccgatcaatgaacct
gccgatattttcacgctcgcgaaacgggacgcacagaatttggcgcgattgaaaaatcgt
gatggtttcggtgaaaagagcgcgaataagctgtttgaagcgattgaacaaaaaagaaaa
ataccgtttggaaagttcttgtttgctctcggcattcgacatcttggtgaggtcgcaggt
gccgatcttgcccgtcattttgtaacttgggatgctttggttcgcacggccgatgcggca
cgcgttgccgctcaatgtgaagtcttggctgaggaggcagaagccgaagaacgcgcgctg
gcagaggcgcaaggccgtcgggcgaatattaagaaatcgcgggataaggtttgggcggat
tgtcctcaagaggcgcttgcggcgtggaatgagtttacatcaattgacgggatcggggcc
gtcttggcggtctccttgatcaccactctgtctcaacccgaagagcgtgccgtcattgac
cgattggttgccgagttagacattcaagcgcctgaacaacgttcaaccgatagtcctgtt
gcgggtaagacggtcgtctttacggggtcgcttgagaagatgacgcgggcagaggcaaag
gcgcgagcggaatcgctgggcgcgaaggtggcgggttccgtcagtgtgaaaactgatttg
ctggtcgctggtccaggtgcagggtccaaggcaaaaaaggccgaagaactgggcatagaa
accatcgacgaagacggttggctcgctttgattggggacgcatga

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