Desulfosporosinus orientis: Desor_3923
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Entry
Desor_3923 CDS
T01675
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dor
Desulfosporosinus orientis
Pathway
dor03030
DNA replication
dor03410
Base excision repair
dor03420
Nucleotide excision repair
dor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Desor_3923
03410 Base excision repair
Desor_3923
03420 Nucleotide excision repair
Desor_3923
03430 Mismatch repair
Desor_3923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dor03032
]
Desor_3923
03400 DNA repair and recombination proteins [BR:
dor03400
]
Desor_3923
Enzymes [BR:
dor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Desor_3923
DNA replication proteins [BR:
dor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Desor_3923
DNA repair and recombination proteins [BR:
dor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Desor_3923
NER (nucleotide excision repair)
GGR (global genome repair) factors
Desor_3923
MMR (mismatch excision repair)
DNA ligase
Desor_3923
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Desor_3923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AET69368
UniProt:
G7WBX1
LinkDB
All DBs
Position
complement(4028405..4030393)
Genome browser
AA seq
662 aa
AA seq
DB search
MQDDFERIAALRKELEEANKQYYELDQPRITDGEYDALMRELLALEAKHPDSVAPDSPTQ
RVGGAVAKEYTKVRHLEPLLSLDNAFDAGDLREFDRRVRQVFAEVEYVVELKIDGLTVAL
TYVDGLMVRGATRGDGSVGEEITANVKTVGSIPLRLNKPVAKLSVRGEGYMPKASFARLN
QEREEEGLSTFANPRNAAAGSLRQLNSRITAERKLDYFAYQLLSANELGLNNQIDVLNYL
KEQGFVVNPEYKVFHDIEEVIKYCEEMAGERHRFPYDIDGLVIKVNDFDLQQELGFTAKS
PRWAISYKFPAEQVETVVEDIILRVGRTGVLTPTAVLQAVPVAGSTVSRATLHNLDNIRE
KDIRIGDHVLIHKAGDVIPEVIRVLPEKRSGEERFFEMPELCPECQSPVLREEGEAAYRC
QSISCPAQQREGIIHFVSRDAMAIDGLGPAVIQQLLDADLIKDAADLYALSFEDLVPLER
MGQKSAENLLKAIADSKERGLAPLIFALGIRHTGVKAGKILAQTFGSMEKLQGAGLEELL
AIPDIGPGMAESLVQFFGMESTERFLAKLQEAGVKMTADISARPQIFAGKSIVVTGSLER
WERREIETLIEERGGKAASSVSKKTAFVVAGEKAGSKLVKAQDLGIAVLTEEEFELMLKD
ES
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatgattttgagcgtatagcagctcttcgcaaggagctggaagaggcaaataaa
caatactatgagctggaccagccccgcatcacggatggggaatacgatgcgctcatgcgg
gagcttttggccttggaagctaagcacccggattcagtggctccggattcgcccacacag
cgggtggggggagccgtagccaaggagtacacgaaagtcaggcatttggaaccgctcctc
agcctggacaatgcctttgacgccggagatttgcgggagtttgaccgcagggtgcgtcag
gtctttgctgaagtggagtatgtggtggagttgaagattgatggtttaactgtggcattg
acctatgtggacgggctgatggtacggggggcgacccggggagacggcagtgtgggggag
gaaattacggctaatgtgaaaaccgtaggttcaattcccttgcgcttaaataagcctgtg
gccaaattaagtgtccggggtgaggggtatatgcccaaagcctcctttgcccgtttgaat
caagagcgtgaagaagaaggactgtcaacgtttgccaatccccgcaatgcggcggcaggt
tccctgcgacagctcaattcccggatcacggcggaacgcaagctggactactttgcttat
cagcttttatccgccaatgagctaggcttaaataatcaaatcgatgtgcttaattatctc
aaggagcaaggctttgtcgtcaaccctgagtataaggtctttcacgatattgaggaggtc
ataaagtattgtgaagaaatggctggggaacgacatcgttttccctacgatattgatggt
ctggtcatcaaagttaatgactttgatctccagcaggaactgggctttaccgccaaaagt
ccccgctgggccatttcctataaattcccggcggagcaagtggaaaccgtggttgaagat
atcatcctgagagtggggcggaccggcgttctgacaccgacagccgttcttcaggcggtt
ccggtggcaggctccacagtcagccgtgccactctccataacctggataatatccgggag
aaggatatccgcatcggcgatcatgtcctcatccacaaagccggggatgtgatcccggag
gtgattcgggttttgccggaaaaacgcagcggtgaggagcggttctttgagatgccggag
ctttgtccggaatgtcagagtccggttttgcgggaagagggggaagcggcttatcgttgt
caaagcatcagctgcccggcccagcagcgggaggggattatccattttgtctcccgggat
gccatggctattgacggcttaggtccggcggtgattcaacagcttttggacgcggatttg
attaaagacgccgcagacctatatgctttaagcttcgaggatttggtgcctttggaacgg
atgggtcaaaaatcagcggaaaacttgctgaaggccattgccgacagcaaagaacgggga
ttggctccgctgattttcgcattgggtatccgccatactggggtcaaggccgggaagatt
ttagctcagacttttggttctatggaaaagctgcaaggagccggtttggaagagctgctg
gccataccggatatcgggccggggatggcagaaagcctggttcagttttttggtatggaa
agtacggagcgttttttagcaaaactgcaggaagccggggtaaagatgacggcggacatt
tcggcaagaccccagatctttgccggcaagagcattgtcgtaacgggttccttagaacgc
tgggagaggcgggagattgagactctcatcgaagagcgtgggggcaaggcggccagcagt
gtcagcaagaagaccgctttcgttgtagccggtgaaaaggcagggtccaagctggtgaaa
gctcaagacttgggcattgcggttttgacggaagaggaatttgagttgatgctcaaggac
gaatcttaa
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