Dipodomys ordii (Ord's kangaroo rat): 105984728
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Entry
105984728 CDS
T07834
Symbol
Setdb1
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord00310
Lysine degradation
dord01100
Metabolic pathways
dord04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
105984728 (Setdb1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
105984728 (Setdb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dord03036
]
105984728 (Setdb1)
Enzymes [BR:
dord01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
105984728 (Setdb1)
Chromosome and associated proteins [BR:
dord03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
105984728 (Setdb1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
105984728 (Setdb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5604
Tudor_4
MBD
SET
Pre-SET
Tudor_5
Chromo_MORC2_6th
Motif
Other DBs
NCBI-GeneID:
105984728
NCBI-ProteinID:
XP_012870457
Ensembl:
ENSDORG00000006830
UniProt:
A0A1S3F3U0
LinkDB
All DBs
Position
Unknown
AA seq
1306 aa
AA seq
DB search
MSSLPGCIGLGAARAAMESEEIAELQQTVVQELGISMEELRQFIDEELEKMDCVQQRKKQ
LAELETWVIQKETEVAHVDQLFDDASRAVTNCESLVKDFYSNLGLEYHDSSSEDESSQPT
EIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQGL
HKGTLSPMSGELSKDGDLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKS
LLSGNHIAYDYHPPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRHVLPALSQ
LYLFLGTVKKTWEDIEDISCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEE
VDGSLVKILFLDDKRCEWIYRGSTRLEPMFSMKTSSASALEKKQGGQLRTRPNMGAVRSK
GPVVQYTQDLTSTGTQFKPMEPPQPIAPPVPPAPSALPAPPLSPQAGDNESLESQLAQSR
KQVAKKSTSCRPGSVGSGHSSPTSPPLNENASGGKPGINQTYRSPLGSTPALSAPQLPPV
SDELPIVSTTSAPAPPAPSGPPAPPAFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCLS
RIRPMRNEQYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERY
LFETGCDFLFLEMFCLDPYVLVDRKFQPYKPFYYILDITYGKEDVPLSCVNEIDTTPPPQ
VAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKMKCACHQLTIQATACTPGGQINPNSG
YQYKRLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIA
RGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDIPCSSDSSGVD
MKDQEDGNSGTEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGPTETAS
KDSRPPDLGPPHIPIPPSISVGGCNPPSSEETPKNKVASWLSCNSVSEGGFADSDSRSSF
KTSEVGEGRSGGSRGEAEKISTSVLGMKDEGDIKQAKKEDPDDRNKVSVVTESSRNYGYN
PHVKPEGLRRPSSKTNMHQSRRLMASAHANPDDVLTLSSSTESEGESGTSRKPTAGQTSN
AAVDSDDIQTISSGSEGEDFEDKKNMSGPTKRQVAVKSTRGFALKSTHGIAIKSTNMASV
DKGESAPVRKNTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFP
WVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccctccctgggtgcattggtttgggtgcagcaagagctgcaatggagtctgaa
gagattgcagagctgcagcagacagtggttcaggagctgggtatctctatggaggaactt
cggcagttcattgatgaagaacttgaaaagatggactgtgtacagcaacgcaagaagcag
ctagcagagttggagacatgggtaatacagaaagaaactgaagtcgctcatgtggaccag
ctctttgatgatgcatcaagggcagtgactaattgtgaatctttggtgaaggacttttac
tctaatctgggacttgaataccatgacagtagctctgaggatgaatcttcccagcccaca
gaaataattgagattcctgatgaagatgatgatgtcttaagtattgattcaggtgatgct
gggagtagaactcccaaagaccagaagcttcgtgaagctatggctgccttgagaaaatca
gctcaagatgtccagaagttcatggatgctgtcaataagaagagcagttcccaaggtctg
cataaaggaactttgagtcccatgtctggagaactgagcaaagatggtgacctgatagtc
agtatgcggattttgggcaagaagagaaccaagacatggcacaaaggcacccttattgct
atccagacagttggaccagggaagaaatacaaggtgaaatttgacaacaaaggaaagagt
ctgctgtcagggaaccatattgcctatgattaccaccctcctgctgacaagctctatgtg
ggcagtcgcgtggtagccaagtacaaagatgggaatcaggtctggctttatgctggcatt
gtagctgagacaccaaacgtcaaaaacaagctcagacatgtcctacctgccctctctcag
ctttatctcttccttgggacagtgaaaaagacttgggaggacatagaagacatttcctgc
cgcgacttcatagaagaatatattactgcctatcccaaccgtcccatggtgctgctcaag
agtggccagcttatcaagactgaatgggaaggcacatggtggaaatcccgagttgaggaa
gtagacggcagcctagtcaagatcctcttcctggatgataaaagatgtgaatggatctat
cgaggttctacacggctagagccaatgttcagcatgaaaacatcttcagcctctgcactg
gagaaaaaacaaggaggacagctcaggacacgtccaaatatgggtgctgtgaggagcaaa
ggtcctgttgtccaatacacccaggatctgactagtactggaacccaattcaagccaatg
gagcctccacaacccatagctccacctgttccacctgctccatctgctttacctgctcca
cctctgtccccccaagcaggtgacaatgaaagcttggaaagccagcttgctcagtcacgg
aagcaggtggccaaaaagagcacatcatgtcgaccaggatctgtgggctctggtcattcc
tctcctacatctcctccactcaatgaaaatgcctctggtgggaaacctgggattaaccag
acatacagatcacctttgggctcaacaccagcactctcggcccctcaattgcctccagtc
agtgatgaattaccaatagtctcaacaacctcggctccagcacccccagctccttctggg
cctccagccccaccagccttccatggcatgttggagcgggcccctgcagagccctcctac
cgtgccccaatggagaagcttttctacttacctcatgtttgtagctatacttgtctgtct
cggatcagacctatgaggaatgagcagtaccgaggcaagaaccctctgttagttccacta
ctgtatgacttccggaggatgacggctcgacgccgagtcaaccgcaagatgggctttcat
gttatctataagacaccctgtggcctctgccttcggacaatgcaggagattgaacgatac
ctatttgaaactggctgtgacttccttttcctggagatgttttgtttggatccttatgtt
cttgtggacagaaagtttcaaccctataaaccgttttactatattttggatatcacctat
ggaaaagaagatgttcctctgtcctgtgttaatgaaattgacacaactcccccaccccag
gtcgcctacagcaaagagcgaatccccggcaagggtgttttcattaatacaggccctgag
tttctggttggctgtgactgcaaggatgggtgtcgggacaagatgaaatgtgcctgccat
caactcactattcaggctacagcctgtaccccagggggccaaatcaaccctaattctggc
taccagtacaagagattagaagagtgtctgcccacaggggtttatgagtgtaacaaacgc
tgtaaatgtgacccaaacatgtgcacaaatcggttggtacagcatggactacaggttcga
ctacagctatttaagacacagaacaagggctggggtatccgctgcttggatgacattgcc
agaggctcttttgtctgtatttatgcaggcaaaatcctgacagatgactttgcagacaaa
gaaggcctggaaatgggtgatgagtactttgcaaatctggatcatattgagagtgtagag
aacttcaaagaagggtatgaaagcgatataccctgttcctctgacagcagtggtgttgac
atgaaggaccaggaagatggcaatagtggtacagaggaccctgaagagtccaatgatgat
agctcagatgataacttctgtaaggatgaggacttcagcaccagctcagtgtggcgtagc
tatgctacccggaggcagacccgaggccaaaaagagaatggacccactgaaacagcttcc
aaggactcacgccccccagaccttggacccccacacattcctatccctccttcaatctct
gtagggggctgcaatccaccttcctctgaagagacacccaagaataaggtggcctcgtgg
ttgagctgcaatagtgtcagtgaaggtggctttgctgactctgatagtcgttcatccttt
aagactagtgaagttggggagggtcggagtggaggaagccgaggggaggctgagaagatc
tccacttcagtactgggcatgaaagatgaaggagacatcaagcaggccaaaaaagaggat
cctgatgatcgaaacaaggtgtcagtagttactgaaagttctcggaattatggttataat
cctcatgtgaagccagaaggacttcgccgtccatctagtaagactaatatgcatcagagt
cggcgactcatggcctctgcccatgccaaccctgatgatgtcctgacactctccagcagc
acagaaagtgagggggaaagtggcaccagccgcaagcccactgcagggcagacttcaaac
gcagcagttgacagtgatgatatccaaaccatctcctctggctcagaaggggaggacttt
gaggacaagaagaacatgtctggtccaacaaagcgccaggtggcagttaaatcaacccga
ggcttcgctcttaaatcaacccatgggattgccattaagtcaaccaacatggcctctgtg
gacaagggagagagtgcacctgttcgaaagaacacacgccaattctatgacggtgaagag
tcttgctacatcattgatgccaagctggaaggcaacctgggtcgctacctcaatcacagt
tgcagtcccaacctgtttgtccagaatgtctttgtggatacccacgatcttcgcttcccc
tgggtggccttctttgccagcaagagaatccgagctgggacagaacttacttgggactac
aactatgaagtgggtagtgtggaaggcaaggagctgctctgctgctgtggagccattgaa
tgcagaggccggcttctttag
DBGET
integrated database retrieval system
