Dipodomys ordii (Ord's kangaroo rat): 105990689
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Entry
105990689 CDS
T07834
Symbol
Kdm2b
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
105990689 (Kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dord03000
]
105990689 (Kdm2b)
04121 Ubiquitin system [BR:
dord04121
]
105990689 (Kdm2b)
03036 Chromosome and associated proteins [BR:
dord03036
]
105990689 (Kdm2b)
Enzymes [BR:
dord01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
105990689 (Kdm2b)
Transcription factors [BR:
dord03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
105990689 (Kdm2b)
Ubiquitin system [BR:
dord04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
105990689 (Kdm2b)
Chromosome and associated proteins [BR:
dord03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
105990689 (Kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
105990689 (Kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
DUF7885
Cupin_8
JmjC
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
105990689
NCBI-ProteinID:
XP_012878604
UniProt:
A0A1S3FRE9
LinkDB
All DBs
Position
Unknown
AA seq
1257 aa
AA seq
DB search
MEGKDFNYEYVQREALRVPLVFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQ
KGTEMSMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQH
LKEKQTEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPP
TLHNLALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFG
GNILHSFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQR
ESMLIDAPTKTSVDGFSSDSWVEMEEESCEQQPQEDEEEKEEEEGHGTDTASKPPADGPT
SPTSTPSEDQENSGKKPKAPAMRFLKRTLSNESEDSTKSATMPIDYPKTPTGSPTTEVSA
KWTHLTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHAEDDPSLAI
TGVPVVSWPKKTPKNQNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRT
ECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFN
LMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKY
ASNLPGSLLKEQKMNRDHKEGQEPTKRRSECEEAPRRKSDEPPKKAPPDGVLRRKSDDVH
LRRKRKYEKPQELSGRKRASTLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPG
KEDKLFRKKRRSWKNTEERLALANKPPRRFKQEPEDDLPAAPPKARDSDHSRSSSPTAGP
STEGAEGPEEKKKVKMRRKRRLPNKELSKELSKELNHEIQKTESSLAHENHQPIKSEPES
ENEEPKRPPGLCERPHRFSKGLNGTPRELRHPLGPGLRSPPRVISRPPPSVSPPKCIQME
RHVIRPPPISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDK
RLWTRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGC
SWIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELR
LAGLDITDASLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCN
KVTDQCLSFFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atggagggcaaagatttcaactatgagtacgtacagagagaagctctcagggttcccctg
gtatttcgagaaaaggatggactaggaattaagatgcctgaccctgattttacagtccga
gatgtgaaactcctagtggggagccggcgactggtggacgtgatggacgtgaacacccag
aagggcacagagatgagcatgtcccagtttgtgcgatactacgagacgcctgaggcgcag
cgggataagctctacaatgtcatcagcctggagttcagccacaccaagctggagcacctg
gtcaagcgtcccactgtggtggatctggtagactgggtcgacaacatgtggccacagcac
ctgaaggagaagcagacagaagcaacgaatgccattgccgagatgaagtaccccaaagtg
aagaagtactgtctgatgagcgtgaaaggttgcttcactgacttccacatcgactttgga
ggcacttccgtgtggtaccatgttttccggggtggaaagatcttttggctgatccccccg
accctgcacaatttggccctgtacgaggagtgggtgctgtcaggcaagcagagtgacatc
ttcctgggagaccgtgtggaaagatgccaaagaattgagctgaaacagggctacacgttt
ttcatcccgtctggttggatccacgcagtctacacccctgtagactctctggtgttcggc
gggaacatcctgcacagcttcaacgtgcccatgcagctgcggatctacgagatcgaagac
agaacccgggtccagcccaagttccgttaccccttctactatgagatgtgctggtatgtc
ttggagagatatgtgtactgcgtgacccagcgctcctacctcactcaggagtaccagcga
gaatccatgcttattgatgccccaacgaagaccagtgtagacggcttctcttctgattcc
tgggtggagatggaggaggagtcctgtgagcagcagccccaggaggacgaggaggagaaa
gaggaggaggaaggacatggtacagatacagcatccaagccacctgccgatggtcccacc
tcacccaccagcaccccttctgaggatcaggagaactcagggaagaagcccaaagcacct
gccatgaggttcctcaagaggacgctgtcaaatgagtctgaggacagcacaaagtctgca
acgatgcccatagactaccccaagacacccactggctcgcccactactgaagtgtctgcc
aaatggacacacctcactgagtttgaactgaagggcttgaaggccctagtggagaaactt
gagtccctcccagagaacaagaagtgtgtccccgagggcatcgaggacccccaggcactc
ctggagggcgtgaagaatgtcctgaaggagcatgcagaagatgaccccagtctggccatc
actggcgtccctgtggtcagctggccaaagaagactccaaagaaccagaaccgggcagtg
ggtcggcccaagggcaagctgggcccagcctccgcggtgaaattggccgccaaccgcacc
acggcaggagctcgccggcgccggacgcgatgccgcaagtgcgaggcctgcctgcggacc
gagtgtggagagtgccacttctgcaaggacatgaagaagttcggaggccccgggcggatg
aagcagagctgcatcatgcggcagtgcattgcgccagtgctgccgcacactgccgtgtgc
cttgtgtgtggcgaggcggggaaggaggacacggtggaggaggaggagggcaagtttaac
ctcatgctcatggagtgctccatctgcaacgaaatcatccaccctggatgccttaagatt
aaggagtcggagggagtggtcaacgacgagcttcccaactgctgggagtgccccaagtgc
aaccacgccggcaagaccgggaaagcctacaagcaaaagcgtggccctggttttaagtat
gcctccaacctgcccggctccctgctcaaggagcagaagatgaaccgggaccacaaggaa
gggcaggagcccaccaagcggaggagtgagtgcgaggaggcgcccaggcgcaaatcagat
gagccccccaagaaggcgcccccagacggcgtcctgcgccgaaagtctgatgatgtgcac
ctgcggaggaagcggaagtatgagaagccccaagagctgagcggacgcaagcgcgcctcg
acgcttcaaacgtccccgggttcctcctctcacctctcgccgaggccccccctcggcagc
agcctcagcccctggtggagatccagtctcacttacttccagcagcagctaaaaccaggc
aaagaagacaagcttttcaggaaaaagcgacggtcgtggaagaacaccgaggagcggctg
gccctggccaacaagcccccgcggcgcttcaaacaggagccggaggacgacctgcccgcg
gcgccccccaaggcccgggacagcgaccactcgcgctccagctccccgactgcggggccc
agcaccgagggagccgaaggccccgaggagaaaaagaaggtgaagatgcgccggaaacgg
cgacttcccaacaaggagctgagcaaggagctgagcaaggagctgaaccacgagattcag
aagacagagagcagcctggcccacgagaaccaccagcccatcaagtcggagcccgagagt
gagaatgaggagcccaagcggccccccggcctctgtgagcgcccacaccgcttcagcaaa
gggctcaacggcaccccccgggagttgcggcaccccctggggcccggcctgcgcagtcca
cccagggtcatctcccggcccccgccctcggtttctccacccaagtgcatccaaatggag
cgccatgtgatccggccgccccccatcagtcccccacccgactcgctgcccctggatgat
ggggcggcccacgtcatgcacagggaggtgtggatggccgtcttcagctacctcagccac
caggacctgtgtgtgtgcatgcgggtctgcaggacctggaaccgctggtgctgcgataag
cggttgtggacccgtatcgacctgaaccactgcaagtccatcacgcctctgatgctcagc
ggcatcatccggcggcagcccgtttccctcgacctcagctggaccaatatctccaagaag
cagctcagctggctcatcaaccggctgcctgggcttcgagacttggtgctgtccggctgc
tcgtggattgctgtctcagccctctgtagctccagctgtccattgctccggaccctggac
gtccagtgggtggaaggtctaaaggacgcccagatgcgggacctcctgtccccgcccaca
gataacaggccgggtcagatggacaatcggagcaagctgcgcaacatcgtggagctgcgt
ctggctggcctggacatcacagacgcctccttgcgactcatcatccgccacatgcccctg
ctctccaagctccacctcagctactgtaaccacgtcaccgaccagtccatcaacctgctc
actgcagtcggcaccaccacccgagactccctgaccgagatcaacctctcagactgcaat
aaggtcactgaccagtgcctgtccttcttcaagcgctgtggaaatatctgtcatattgac
ctgaggtactgcaagcaagtcaccaaggaaggctgtgagcagttcatagccgagatgtct
gtgagtgtccaatttgggcaagtggaagaaaaactcctacaaaaactaagttag
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