Oryza sativa japonica (Japanese rice) (RAPDB): Os02g0810300
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Entry
Os02g0810300 CDS
T02163
Name
(GenBank) Similar to NBD-like protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os02g0810300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os02g0810300
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Os02g0810300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA_28
AAA
SMC_N
AAA_15
NACHT
AAA_25
AAA_5
PduV-EutP
AAA_18
AAA_22
AAA_24
AAA_23
AAA_33
AAA_30
SRP54
Arf
AAA_16
Rad17
AAA_14
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
BAF10383
RAP-DB:
Os02g0810300
UniProt:
A3ACJ0
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Position
2
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AA seq
292 aa
AA seq
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MAGGEDEGWRRSGIEVSALQFDYDGQPPLFARFNLRIAPGSRCLLIGANGSGKTTLLKIL
AGKHMVGGRDVVRVLNGSAFHDTQLVCNGDLSYLGGSWSRAIGSAGDVPLQGDFSAEHMI
FGVDGVDPVRREKLVDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEITVDLD
VVTRMDLLDFFKEECEQREATIVYATHIFDGLESWATDIAYIQEGELRKSAKYSDVEELK
SAKNLLSVVESWLRSETKLPKKEHPRPETQPRRSSPFDASPFRSSRHMAYYR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggcgaggacgaagggtggaggaggagcggcatcgaggtgagcgcactgcag
ttcgactacgacgggcagccgccgctcttcgcgcggttcaatctccgcatcgcccccggc
tcacgatgcctcctcatcggcgcgaacggatcaggcaagaccactctcttgaagattctt
gcggggaaacatatggttggaggaagagatgttgtccgtgttcttaatggttctgctttt
catgacacacagcttgtgtgcaacggtgacctttcctacttaggtggttcatggagtcgg
gctatcggttcagctggtgacgttcctctgcaaggcgacttctctgctgaacacatgatt
tttggagttgatggggttgatcctgttaggcgagagaagcttgttgatctactagatatt
gatctgcaatggcgcatgcataaagtctcagatggacaacgccgcagggtacaaatctgc
atgggtcttcttcatccatacaaggtactcttgcttgatgaaatcaccgttgatcttgat
gttgtgactagaatggatctccttgacttctttaaggaagagtgtgaacagagagaagca
accattgtctatgccactcatatatttgatggattggaatcatgggctactgacattgca
tacatccaagaaggtgaattgagaaaatcagcaaaatactctgacgttgaggagctaaag
agtgccaaaaacttgctgtcagttgtcgagtcatggctgcgatctgagaccaaactccct
aagaaagaacatccccgtcctgagacccagcccaggcgctcctctccatttgatgcttca
ccgttccgatcttcacgccacatggcctactaccgttga
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