Oryza sativa japonica (Japanese rice) (RAPDB): Os03g0794800
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Entry
Os03g0794800 CDS
T02163
Name
(GenBank) Similar to XRN3
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
Os03g0794800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os03g0794800
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
Os03g0794800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
BAF13456
RAP-DB:
Os03g0794800
UniProt:
Q0DMT2
LinkDB
All DBs
Position
3
Genome browser
AA seq
988 aa
AA seq
DB search
MGVPAFYRWLADRYPQTVSDAVEEEPVELEPGAFVPVDLRRPNPNGLEFDNLYLDMNGII
HPCFHPEGRPAPTTYDEVFKSIFAYIDHLFGLVRPRKLIYMAIDGVAPRAKMNQQRSRRF
RAAKDAADAAAEEERLRKEFEAEGRTLVAKEKSEAIDSNVITPGTPFMFVLSSALQYYIQ
LRLNHTPGWQSVKVMLSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVITMPGQHEKCFLCGQVGHLAAECRGSGQADKTVELPPIHKKKYQF
LNIWVLREYLEKDLEIVDPPFKINFERVVDDFVFMCFFVGNDFLPHMPTLEIREGAINLL
MNIYRREFTSMGGYLTDGGEVLLDRVEHFIQSVAVHEEQIFQKRARIQKAIQNNEERNRV
QTENSEDNQYVDKVKLGEPGYRVRYYAEKFKEEAELKPIDQVQRDVVQKYVEGLCWVMRY
YYQGVCSWQWFYPYHYAPFASDLKCLAELEITFFLGQPFKPFDQLMGTLPAASSNALPKY
YGDLMNDPNSPLKSFYPKDFEIDMNGKRFAWQGIAKLPFIDERRLLAETQKLEETLTDEE
RFRNRTMFDILYVRETHPLAAQIAFLYQMCSQSPNASYIIPIDPAASGGMNGFLCLSERN
CYSIVVTSPVKGFNGIAQNRVLNATYLNPQYHKHIPEPPEGVIIPAKILKPSDFKPFPIL
WHEDNSRRQPRERPQVSGALSGSVLGEAAHRLVKNSLQIKSGYSAGLLDMPYRGAPYGPG
NRPRPAGPLGYERGFVENSYNGHMSRSVPNSHPQFFGDAQANRQNVRILERPNYRNNDSA
IHSGMSQLTIQDGPRMHQNNRMQNSGFSPNQPHPNQYAGFPPQRPMQNSGFTPQRPAQYS
GFPHQRPVQIGLQHQPAVNGIQPPLPPSAWIGRPISGVPAGVPAKQDPRMAMDRQPKQDN
SRSQHDKRQQATKVVYRVKGQGPNGLSE
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttctaccggtggctggcggaccggtacccgcagacggtgtcggac
gcggtggaggaggagcccgtggagctcgagcccggcgccttcgtccccgtcgacctccgc
cgccccaaccccaacggcctcgagttcgacaacctctacctcgacatgaacggcatcatc
cacccctgcttccaccccgagggccgcccggctccgaccacctacgacgaggtgttcaag
tcgatttttgcctacattgaccacctcttcggcctcgtccgcccgaggaagctcatctac
atggccatcgatggcgtcgcgccaagggcgaagatgaatcagcagaggtctagacgtttc
cgggctgctaaggatgcggctgacgcggcagctgaggaggaaaggttgaggaaggaattt
gaggctgaaggcaggactttggttgcgaaggagaagtcggaagcgattgactcaaatgtc
ataactcctgggacaccattcatgtttgtactctcttcggcgcttcaatactacatacag
ctgagattgaaccacacacctgggtggcaatctgtcaaggtaatgctttctgattcgaac
gtccctggggagggagaacacaagattatgtcatacatccgcctgcagcgcaatctccca
ggatttgacccaaatacacgccattgtttatatggccttgatgctgatttgatcatgctt
tctctggctactcatgaggtccacttctccattttaagagaggtgattaccatgccaggg
caacatgaaaaatgctttctctgtggtcaagttggtcacttggctgctgaatgcagagga
tctggtcaggctgataagaccgtggagctccctcctatccataagaagaagtatcagttt
cttaacatctgggttctgcgtgaatacctggagaaggatttggaaattgttgatcccccc
ttcaagataaactttgagcgtgttgtggatgattttgttttcatgtgtttctttgttggg
aatgactttctgcctcacatgccaactttggagatccgcgagggtgccattaatcttctc
atgaatatatatagaagggagttcacatcaatgggtggttacctcaccgatgggggtgag
gttttgttggatcgagtggagcatttcattcaatctgttgctgtccatgaagagcaaatt
ttccagaagcgtgcacgcattcagaaggctatccagaacaatgaggagaggaatagagtg
cagacagagaactctgaggataatcaatatgtggacaaggtaaaattaggagaaccagga
tacagggtgagatactacgctgagaagtttaaagaagaggcagaactaaaacccattgat
caagttcagagagatgttgtccagaaatatgtggaaggtctttgctgggttatgagatac
tactatcaaggtgtttgctcatggcagtggttttatccataccattatgcaccttttgca
tcagacctgaaatgcttggctgaattggagattacatttttcttgggtcaacctttcaag
ccatttgatcaactaatgggaacactaccagctgctagttccaatgcgttgccaaagtac
tatggggatttgatgaatgatcctaattcaccgttgaagtctttctatcccaaagatttt
gagatagacatgaacggcaaacgttttgcatggcagggtattgcaaaattgccttttatc
gatgaaaggcgtctgcttgcggagacgcagaagcttgaagaaacattgacagatgaagag
agattcaggaataggacaatgtttgacatcctttacgtgcgggaaactcatccattggcc
gctcaaattgcatttctatatcagatgtgctctcaatcaccaaatgcttcctatataatt
cccattgaccctgctgctagtggtggaatgaacggatttctttgtttatctgaaaggaac
tgttacagcatcgtggtaacatctccagttaaggggttcaatggcatcgcccagaacaga
gttctgaatgcaacctaccttaaccctcagtatcacaaacacattcctgagcctccggaa
ggtgtcatcatacctgcaaagatattgaagcctagtgatttcaaaccctttcctattttg
tggcatgaagataatagtcggcgtcagccaagagaaaggcctcaggtttctggagctctg
tcaggctctgtcttaggagaggctgcacatcgcctggtgaaaaactcactgcagataaaa
tccggctactctgctgggctgcttgacatgccatacaggggtgccccctatggtcctgga
aacagacctaggcctgctggaccattgggatatgagagaggttttgttgaaaattcatac
aatggacacatgtccagaagcgttccaaattctcatcctcagttcttcggcgacgctcaa
gccaacagacagaatgtgaggatactggaacgaccaaactatcgaaacaacgacagtgcc
atccattcagggatgtcgcaactaacaatccaagatggcccaaggatgcatcaaaacaac
aggatgcagaactccggattttcacctaatcagccacatcccaatcagtatgcaggattc
ccaccccagcgtcccatgcagaactccggttttacgccacagcgacctgcacaatattca
ggatttccacaccagaggcctgtccaaataggacttcaacatcagccagcagtaaatggg
attcaaccaccgttaccccccagtgcatggattggcaggccaataagtggagtcccagca
ggagtacctgccaagcaggatcctaggatggccatggataggcagcccaaacaagataac
tcgagatcacagcatgacaagagacagcaggctactaaggtagtataccgtgtcaaaggt
caaggtcccaatggcctgagtgagtga
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