Oryza sativa japonica (Japanese rice) (RAPDB): Os04g0390000
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Entry
Os04g0390000 CDS
T02163
Name
(GenBank) Similar to 2-oxoglutarate dehydrogenase, E1 component
KO
K00164
2-oxoglutarate dehydrogenase E1 component [EC:
1.2.4.2
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa00020
Citrate cycle (TCA cycle)
dosa00785
Lipoic acid metabolism
dosa01100
Metabolic pathways
dosa01110
Biosynthesis of secondary metabolites
dosa01200
Carbon metabolism
dosa01210
2-Oxocarboxylic acid metabolism
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
Os04g0390000
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
Os04g0390000
Enzymes [BR:
dosa01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.4 With a disulfide as acceptor
1.2.4.2 oxoglutarate dehydrogenase (succinyl-transferring)
Os04g0390000
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Gene cluster
GFIT
Motif
Pfam:
E1_dh
OxoGdeHyase_C
Transket_pyr
2-oxogl_dehyd_N
Motif
Other DBs
NCBI-ProteinID:
BAF14552
RAP-DB:
Os04g0390000
UniProt:
Q0JDN5
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All DBs
Position
4
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AA seq
1001 aa
AA seq
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VRNLARAPANPFAGPAPRYFHSTRPRRFAAPVPRAVPLSRLTDSFLDGTSSVYLEELQRA
WEADPTSVDESWDNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVSGHLKAKLDPL
ALEERPIPDVLDPAFYGFSEADLDREFFLGVWRMAGFLSENRPVQTLRSVLERLEQAYCG
TIGYEYMHIPDREKCNWLRDRIETVNAREYSYDRRQVMLDRLMWSTQFESFLAQKWTTAK
RFGLEGAETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGG
TKPAEEGEGLYTGTGDVKYHLGTSYDRPTRGGKHIHLSLVANPSHLEAVDPVVAGKTRAK
QYYSNDLDRTKNLGVLLHGDGSFSGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTD
PRAGRSSQYCTDVAKALDAPIFHVNGDDLEAVVHVCELAAEWRQTFHSDVVVDIVCYRRF
GHNEIDEPSFTQPKMYKIIRNHQSALEIYQNRLLESGKISKEDIDKMQKKVSTILNDEFQ
NSKEYIPNKRDWLSAYWTGFKSPEQISRIRNTGVKPEILKRVGEAMTTLPENFKPHRAVK
KIFELRRQMIETGEGIDWAVGEALAFATLIIEGNHVRLSGQDVERGTFSHRHAVIHDQET
GEQYCPLDNLVMNQDEELFTVSNSSLSEFAVLGFELGYSMENPNSLVLWEAQFGDFSNGA
QVIFDQFLSSGEAKWLRQTGLVVCLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDP
TLRKQIQQCNWQVVNVTTPANYFHVLRRQIHRDFRKPLIVMSPKNLLRHKDCKSNLSEFD
DLAGHPGFDKQGTRFKRLIKDQNNHKDLEEGIKRLVLCSGKVYYELDEERRKKERDDVAI
CRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYSYINPRLLTAMRALGRGTIDD
IKYVGRAPSAATATGFYSVHVQEQTELVQKALQRDPINSPF
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
gtgaggaacctggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttc
cactccacccgcccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgc
ctcaccgacagcttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcg
tgggaggctgatcccacctctgtcgacgagtcctgggacaatttctttcggaactttgtc
gggcaggctgcaacttcgcctggcatatctgggcagacaattcaggaaagcatgaggttg
ctgcttcttgtgcgagcgtaccaggtgagtggtcacctgaaggctaagcttgatcctctc
gcgctagaggagcggcctatccctgatgttctggaccctgcgttctatgggttctctgag
gctgatctggaccgggagttttttcttggtgtgtggaggatggctgggttcttgtcggag
aatcgccctgtgcagacactccgttctgtgttggagcggcttgagcaagcttactgtggt
accattgggtatgagtacatgcacatacctgacagggagaaatgtaattggctgagggat
aggattgagacggtcaatgcaagggagtactcctacgaccgtcgccaggtcatgcttgat
aggctcatgtggagcactcagtttgagagcttcttggcacagaaatggacgaccgccaag
cggtttggtcttgaaggtgcggagacactgatccctggcatgaaggagatgtttgacagg
gcagctgatcttggtgtagagagcattgtgattggtatgccacacagaggtaggctgaat
gtcttgggaaatgtcgtgaggaagcccttgcgacagatcttcagtgagtttagtggtggt
accaagcctgccgaagaaggggagggcttgtatacagggactggagatgtcaaataccat
ctaggaacttcatacgataggcctaccagaggtggaaagcatatccatctgtctctggtt
gcaaacccaagtcatttggaagcagtcgatcctgttgttgctgggaagaccagagcaaaa
cagtactattctaatgatcttgacaggaccaagaatttaggagtcttgttgcatggtgat
ggaagcttctcagggcagggtgtagtgtatgaaaccctgcatctcagtgctcttccaaac
tacactactggtgggacaattcacattgtggtcaataatcaggttgctttcactactgat
ccaagggcagggaggtcttcgcagtattgcacagatgttgctaaagcattggatgctcca
attttccatgtgaatggtgatgacttggaggcagtggttcatgtctgtgagcttgctgcg
gagtggcggcaaacatttcattctgatgttgtggtggatattgtatgctaccgccggttt
gggcataacgagattgatgagccttccttcacccagcctaaaatgtacaagataattagg
aaccaccagagtgctcttgagatataccaaaacagacttttagaatctgggaagatatcc
aaggaagatattgataagatgcagaagaaggtcagcactatcttgaatgatgaattccaa
aacagcaaagaatatattcccaataagagagactggctctcagcttactggactggattc
aagtcaccagaacagatttcacgaatccgaaatactggtgtcaagccagagattctaaaa
cgtgttggagaagccatgactactctgcctgaaaatttcaagccccacagggctgtcaaa
aagatttttgagctgcgtcgtcagatgattgagacgggcgaaggcattgattgggctgtt
ggtgaagcacttgcttttgcaactcttataattgagggaaaccatgttaggttaagtggt
caggatgttgagaggggtacattcagccaccgccatgctgttatccatgaccaggaaact
ggagagcaatactgtccgcttgataatcttgttatgaatcaagatgaggaactatttact
gtaagcaacagttccctgtcagagtttgctgttttgggctttgaattgggctattccatg
gagaatccaaactcactggttttatgggaagcccagtttggtgatttttccaatggagct
caagtgatatttgatcagtttctgagtagtggagaggcaaaatggctccgccagaccggt
cttgtcgtttgccttcctcacggatatgatggtcaggggcctgaacattccagtgcaagg
ttggagcgtttccttcagatgagtgatgacaacccttatgttattcctgagatggatcca
actctgaggaagcaaatccagcagtgcaactggcaagttgtgaatgtcacaactcctgca
aactatttccatgtcctgcgtcgccagattcaccgggacttcagaaagcctttgattgtt
atgtctccaaagaatctccttcgacacaaggactgcaaatcgaatctttctgaatttgat
gaccttgctggtcaccctggatttgacaagcaaggaacccggtttaagcgtctaattaaa
gatcagaacaaccataaggaccttgaggagggaatcaagcgtttagttctctgttctgga
aaggtatattatgagttggacgaagaaagaagaaaaaaggagcgtgatgatgttgctata
tgtagagttgaacagctctgtccattcccatatgacctcatccagcgcgagttgaagcga
tatccaaatgccgagattgtttggtgccaagaggaacccatgaacatgggggcgtacagc
tacatcaatcctcgcctcctgaccgcgatgagggcgcttggtcggggcacgatagacgac
atcaaatacgttggaagggccccatctgcagccaccgcaacaggtttctactccgtccat
gtgcaggagcaaaccgagcttgtgcagaaggcactgcagcgagaccctatcaactctcca
ttttga
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