Dolichospermum sp. DET69: EZY12_20990
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Entry
EZY12_20990 CDS
T10135
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dot Dolichospermum sp. DET69
Pathway
dot03030
DNA replication
dot03410
Base excision repair
dot03420
Nucleotide excision repair
dot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EZY12_20990 (ligA)
03410 Base excision repair
EZY12_20990 (ligA)
03420 Nucleotide excision repair
EZY12_20990 (ligA)
03430 Mismatch repair
EZY12_20990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dot03032
]
EZY12_20990 (ligA)
03400 DNA repair and recombination proteins [BR:
dot03400
]
EZY12_20990 (ligA)
Enzymes [BR:
dot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EZY12_20990 (ligA)
DNA replication proteins [BR:
dot03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EZY12_20990 (ligA)
DNA repair and recombination proteins [BR:
dot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EZY12_20990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EZY12_20990 (ligA)
MMR (mismatch excision repair)
DNA ligase
EZY12_20990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EZY12_20990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
TP_methylase
RCDG1
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QSX67182
LinkDB
All DBs
Position
complement(4579968..4582013)
Genome browser
AA seq
681 aa
AA seq
DB search
MMSTQPELKRIEELRRLLQKASYAYYVLDAPTLEDTVYDRLYRELQELETKYPELVTTDS
PTQRVGERPATHFTSVRHNIPLYSLENAFNIEELQNWDQRWRRHAPSQYNDGEIEYVSEL
KIDGAALALTYEDGLLVRGTTRGDGIMGEEITQNVRTIRSIPLRLNFDGLENITKVEVRG
EVFLPLQVFKEINEKRQKTGEQVFANPRNAVAGTLRQLDSRIVAQRQLDFCAYTLHITGL
DDSSIANTQWEALELLQRLGFRVDTNHKLCHSIAEVAEYYQYWDTERLNSPYMTDGVVVK
LNTFRLQEQLGFTQKFPRWAIALKYPAEEAPTRVEKITVNVGRSGALTPLAEMLPVQLAG
TTVSRATLHNSDRIEQLDIRIGDTVIVRKAGEIIPEVVRVIKELRPADTQPFIMPCHCPV
CGQKVVRETGEAVTRCVNASCAAILKGEIEHWVSRDALDIKGVGEKLVYQLVDKGLVHSV
ADLYDLTADKLGELERMGQKSAEKLINAIAQSKTQPWSRVLYGLGIRHVGSVNAQLLTEK
FITVAELTTARQSDIEGVYGIGAEIAQSVYQWFRTPANQTLIDRIQAIGLQLATSTEAQA
VGEINQKFVGKIFVVTGTLPTLKRDEAKALIQKSGGKITDSISKKTDFLVVGADAGSKLE
KAQTLGISQLSEAQLLAMLAE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcaactcaacctgaattgaagcgaatagaagaattgcggcgattattgcaaaaa
gcaagttatgcttattatgtactagatgcgcccactctggaagatacggtttatgaccga
ctgtatcgagaattgcaagaattagaaacgaagtatccagaattagttacgaccgatagt
ccgactcagcgcgttggcgaaagacctgctacccattttacctcagtccgccataatatt
cccctctacagtttggaaaatgcttttaatattgaagaattgcaaaattgggatcagcgg
tggcggcgacacgcacccagtcagtataatgacggagaaatagaatatgtatctgagtta
aaaattgatggtgctgctttagctttgacttatgaagatggacttctagtcagaggtaca
actagaggagatgggataatgggtgaagagattacccaaaatgtgagaactattcgctca
attcccctgcgtttaaattttgacgggttggaaaatattactaaggtggaagtccgagga
gaagtatttctacctttacaggtattcaaggaaattaacgagaaaagacaaaaaaccggg
gaacaggtatttgctaacccgcgcaatgctgtagctggtacgcttagacaattggattcg
cggattgtggcacagcggcagttagatttctgtgcctatactttacatattacgggtttg
gatgattccagtattgccaatactcaatgggaagctttggaattgttgcaaaggttgggt
tttcgagttgataccaatcataaactctgccattctattgctgaagtggctgaatattac
caatattgggatacagaacggctgaattctccctatatgacagatggtgttgtcgtcaaa
ttaaatacgtttagactgcaagaacaattggggtttacacagaaatttccccgctgggcg
atcgcgttaaaatatcccgctgaagaagccccaacccgtgtagaaaaaattacagttaat
gttggcagaagcggggcgttaactcctttagcagaaatgttaccagtacaattagcagga
acaactgtttcccgtgctaccttacataatagcgatcgcattgaacaattagatatccgg
attggtgacaccgtgattgttcgcaaagctggggaaatcattcccgaagtggtccgagtt
attaaagaattacgtcccgctgacacccagccttttattatgccttgccattgtcccgtt
tgtggacaaaaggtagtcagggaaactggagaagcagttactaggtgtgtaaatgcttct
tgtgcggcgattctcaaaggagaaattgaacattgggtaagtcgtgatgctttagatatt
aaaggtgttggagaaaagttggtgtatcaattagtagataagggattggttcattccgtt
gctgatttatatgacttgacagcagataaattaggtgaattagaacgcatggggcagaag
tcggcggaaaaattgataaatgcgatcgcccaatcaaaaactcaaccttggtctagagta
ttatatggtttaggcatccgtcatgttggcagcgtcaacgcccaattattaacagagaag
tttattactgttgcagagttaacaactgcaagacagtcagatattgaaggcgtttatggt
atcggtgcagaaattgcccaatcagtctatcaatggtttcggactccagctaatcaaacc
ttgattgaccgcatccaagccattggtttacaattagcaaccagcacagaagctcaagct
gtgggcgaaattaatcaaaaatttgtcggtaaaatatttgtcgtgactggcacattacca
accttaaaacgcgatgaagccaaagccttaattcaaaaatctggtggtaaaatcactgat
tcaataagtaaaaaaacagattttttagttgtaggagccgatgctggttctaaattagag
aaagcgcagactttaggaatcagtcagttgagtgaggcacagttattggcaatgttggca
gaatag
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