Devosia oryziradicis: JI749_08965
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Entry
JI749_08965 CDS
T09885
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
doy
Devosia oryziradicis
Pathway
doy03030
DNA replication
doy03410
Base excision repair
doy03420
Nucleotide excision repair
doy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
doy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JI749_08965 (ligA)
03410 Base excision repair
JI749_08965 (ligA)
03420 Nucleotide excision repair
JI749_08965 (ligA)
03430 Mismatch repair
JI749_08965 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
doy03032
]
JI749_08965 (ligA)
03400 DNA repair and recombination proteins [BR:
doy03400
]
JI749_08965 (ligA)
Enzymes [BR:
doy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JI749_08965 (ligA)
DNA replication proteins [BR:
doy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JI749_08965 (ligA)
DNA repair and recombination proteins [BR:
doy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JI749_08965 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JI749_08965 (ligA)
MMR (mismatch excision repair)
DNA ligase
JI749_08965 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JI749_08965 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
RUBY_RBDX
Filo_glycop
Motif
Other DBs
NCBI-ProteinID:
QQR34525
LinkDB
All DBs
Position
1788557..1790767
Genome browser
AA seq
736 aa
AA seq
DB search
MTDLSQKPVDDLTSDEAEAELARLAKAIAAADIAYHQKDAPEITDAEYDALRRRNDAIEL
AFPDLVRADSPGLSVGAPPAEGFAKVRHAVPMLSLAKAYTDEDVVDFLERGKRFFQKDED
LELAFTAEPKIDGLSASLLYENGVFVRGATRGDGAVGEDITANLRTIKDIPEKLAGSGWP
SSIEIRGEVYMTYAEFQALKARSAASGGQDYVNPRNTAAGSLRQKDAAVTASRNLKFFAY
AWGATTQDPAPTQFEAVQKFAEWGFKISPLMVRAKSVDELIAHYKLIEEQRSSLGYDIDG
VVYKVDQLELQRRWGFVTGEPRWAIAHKFPAEQATTVVRGIDIQVGRTGTLAPVARLDPV
SVGGVTVVNVTLHNEDYIAGKDSNGLPIREGKDIRIGDTVIIQRAGDVIPQIVDVVIDKR
PAGAQPYRMPDTCPVCGSPATREINEKTGKEDSRRRCTGELICPAQAVETLKHFVSRGAL
DIEGFGAENIELFFSKGLVKTAADIFTLHERRPAVQQALAEKREEQARIREAASGRTRKN
VRSVEDRNYEGLDKLLAAIEARREPELDRFIFALGIRHIGETTGAVLARTFGTVEELIRI
GKEIASAEDPHSVFPSVDGIGGTVIEALVDFFGNERNDAALNALLSQVHPKPYIVNVSAD
SVVAGKTVVFTGSLEKMSRSEAKAMAERLGAKVAGSVSAKTDILVAGPGAGSKLKSAEAL
GVEVITEAEWFERVGK
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacctgtcccaaaagcccgtcgacgatcttacctccgatgaagccgaggccgag
ctggcgcggctggcgaaggccattgctgctgccgacatcgcctaccaccagaaggacgcg
cccgagattaccgacgcggagtacgatgcgctgcgccgtcgcaatgatgccattgagctg
gccttccctgatctcgtccgtgccgacagtccgggcctttcagtgggcgcacccccggcg
gagggatttgcgaaggtgcgccatgccgtgccgatgctaagcctggccaaggcttatacc
gacgaggatgtggtcgacttcctggaacgcggcaaacgcttcttccagaaggacgaggat
ctggagctggctttcaccgccgagcccaagatcgacggactgtcggcctcactgctctac
gagaacggcgtcttcgtacgcggggctacgcgcggcgatggggccgtgggcgaggacatc
accgccaacctccgcaccatcaaggacattcccgaaaagctggcggggtccggctggccg
tccagcatcgaaatccgcggcgaggtctacatgacctatgccgaattccaggcgctgaag
gcccggtctgccgcctctggcgggcaggattatgtgaacccgcgcaataccgccgctggc
tcgctgcgccagaaggacgctgccgtcactgccagccgaaacctcaagttctttgcctat
gcctggggcgccaccacccaggatccggcgccgacccaattcgaagccgtgcagaaattc
gccgaatgggggttcaagatcagcccattgatggtgcgcgccaagtcggtggacgagctt
atcgcccactacaaactgatagaggaacagcgctcgtcactcggttatgacatcgatggc
gtcgtctacaaggtcgaccagctcgagctgcagcgccggtggggctttgtcacgggtgag
ccgcgctgggccatcgcccataagttccctgctgaacaggcgaccacggtggtgcgcggc
atcgatatccaggtgggacgcaccggtacgctcgcgcctgttgcacgcctcgatccggtc
agcgtgggtggggtcaccgtcgtcaatgttaccctgcacaacgaggactatatcgccggc
aaggacagcaatggcctacccatccgcgagggtaaggatattcgcattggcgatacggta
atcatccagcgggcaggggacgtcattccccagatcgtcgacgtagtcatcgacaagcgg
cccgccggggcgcagccctaccgcatgcccgatacctgcccggtttgtggctcgccggcg
acgcgcgagatcaacgagaagaccggcaaggaagattcgcgccgtcgctgcacgggtgag
ttgatctgcccggcccaggcggtggagacgctcaagcatttcgtctcgcgtggggcgctc
gacatcgaagggttcggggccgagaacatcgagctgtttttcagcaaggggctggtcaag
accgcggccgacatcttcacgctgcatgagcggcgccccgccgtgcagcaggccctggcc
gaaaaacgcgaggagcaggccaggattcgcgaagcggcttcaggcaggacgcgcaagaat
gtccgcagcgtcgaggatcgaaactatgaggggctcgacaagcttctggcggccatcgaa
gcacggcgcgagccggagctcgatcgcttcatctttgcccttggcatccgccatatcggc
gagaccaccggcgccgtcctggcccgcacctttggcacggtggaggaactcatccgcatc
ggcaaggaaatcgcctcagccgaagacccccatagcgtcttcccctcggtggacggcatc
ggcggcacggtgattgaggcgctggtcgatttctttggcaacgagcgcaatgacgctgcc
ctgaacgccctgttatctcaggttcatcccaagccctatatcgtgaatgtatctgccgac
agcgtcgttgccggcaagaccgtggtcttcactggctcactcgaaaaaatgtcacgatcg
gaagccaaggctatggccgaaaggttgggcgccaaggtggcgggatcggtatcggccaag
accgatatcctggtcgccggaccaggggcagggtccaagctcaagtcggccgaagcgctg
ggcgtcgaggttatcaccgaggcagagtggttcgagcgggtcgggaagtaa
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