Dolichospermum sp. UKL201: HEP80_06590
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Entry
HEP80_06590 CDS
T10192
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
doz Dolichospermum sp. UKL201
Pathway
doz03030
DNA replication
doz03410
Base excision repair
doz03420
Nucleotide excision repair
doz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
doz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HEP80_06590 (ligA)
03410 Base excision repair
HEP80_06590 (ligA)
03420 Nucleotide excision repair
HEP80_06590 (ligA)
03430 Mismatch repair
HEP80_06590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
doz03032
]
HEP80_06590 (ligA)
03400 DNA repair and recombination proteins [BR:
doz03400
]
HEP80_06590 (ligA)
Enzymes [BR:
doz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HEP80_06590 (ligA)
DNA replication proteins [BR:
doz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HEP80_06590 (ligA)
DNA repair and recombination proteins [BR:
doz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HEP80_06590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HEP80_06590 (ligA)
MMR (mismatch excision repair)
DNA ligase
HEP80_06590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HEP80_06590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
RCDG1
TP_methylase
Motif
Other DBs
NCBI-ProteinID:
QSV53597
LinkDB
All DBs
Position
1392872..1394917
Genome browser
AA seq
681 aa
AA seq
DB search
MMSTQPETKRIEELRCLLQKAGYAYYVLDAPIMEDTVYDRLYRELQELETQNPELITSDS
PTQRVGERPATHFTSVRHNIPLYSLENAFNIEELQNWDQRWRRHSLTQYNNGDIEYVSEL
KIDGAALALTYENGVLVRGTTRGDGVMGEEITQNVRTIRSIPLRLNFDGLENIAKVEVRG
EVFLPLQVFKEINQKRQKAGEQIFANPRNAVAGTLRQLDSRIVAQRQLDFFAYTLHITGL
DDSSIANTQWEALELLQRLGFRVDTNHKLCHSIAEVVEYYQYWDTERLHSPYMTDGVVVK
LNTFRLQEQLGFTQKFPRWAIALKYPAEEAPTRVEKITVNVGRTGALTPLAEMLPVQLAG
TTVSRATLHNSDRIEQLDIRIGDTVIVRKAGEIIPEVVRVIKELRPADTQPFIMPSHCPA
CGQLVVRETGEAVTRCINASCPAILKGEIEHWVSRDALDIKGVGEKLVYQLVDKGLVHSV
ADLYDLQIEDLCALERMGKKSAEKLINAIAQSKTQPWARVLYGLGIRHVGSVNAQLLTEK
FTTVEELTAARQSDIAGVYGIGAEIAQSVYQWFRTPANQSLISRIQAIGLELANSTAAQS
VGEINQKFAGKTFVLTGTLPTLKRDEAKALIQKSGGKITDSISRKTDFLVVGADAGSKLE
KARKLEISQLTEAQLLAMLTE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcaactcaacctgaaaccaaacgtatagaagaactacgatgtttgctacaaaaa
gcaggctacgcttattatgttctagatgcgccaattatggaggatacggtttatgatcga
ctgtatcgagaattgcaagaattagaaacgcaaaatccagaattaattacttctgacagt
ccgactcagcgcgttggtgagcgtcctgcaacccattttacctcagtccgtcataatatc
cccctgtacagcctggaaaatgcgtttaatattgaagaattgcaaaattgggatcaacgg
tggcggcgacactcgctaactcagtataataacggagacatagaatatgtatctgagttg
aaaattgatggtgctgctttagcattaacttacgaaaatggagttttagtcagggggaca
acgcgaggagatggggtaatgggtgaagagattacccaaaatgtgagaactattcgctca
attcccctgcgtttgaattttgacggtttagaaaatattgctaaagtggaagtacggggc
gaggtgtttctacctttacaggtgtttaaagaaattaatcagaaaagacaaaaagctggt
gaacaaatatttgctaacccgcgcaatgctgtagcaggtacgctcagacaattagattct
cgcattgtcgcacaacgacagttagatttctttgcttatactttgcatattaccgggttg
gatgattccagtattgccaatacccaatgggaagctttggaattattgcaaagacttggt
tttcgagttgataccaatcataaactctgccattctattgctgaagttgttgaatattac
caatattgggatacagaacggctgcattctccctacatgacagatggtgttgtcgttaaa
ttaaatacttttagactgcaagaacaattggggtttacacagaagtttcctcgctgggct
atagccttaaaatatcccgccgaagaagccccaacccgtgtagaaaaaatcactgttaac
gttggcagaaccggggcattaactcccttagcggaaatgttgcccgtacaattagcgggg
acaacagtttcccgtgctaccttacataatagcgatcgcattgaacaattagacatccgt
attggtgacaccgtgattgttcgcaaagccggggaaatcatccccgaagtcgtccgggta
atcaaagaactgcgtcccgctgatacccaacctttcattatgccttcccattgtcccgcg
tgtggacagctagtagtcagggaaactggagaagcagttactagatgtataaatgcttcc
tgtcccgccattctcaagggtgaaattgaacattgggtcagtcgtgacgcgttagatatt
aaaggtgtaggcgaaaagttggtgtatcaacttgtagacaaaggcttagtccattccgtt
gctgatttatatgacttgcaaatagaagacttgtgtgcattagaacgcatgggaaaaaaa
tcggcggaaaaattgatcaatgcgatcgctcaatcaaaaactcaaccctgggctagagta
ttatatggtttaggcatccgtcacgttggcagcgtcaacgcccaattactcacagagaag
tttaccaccgtcgaagagttaacagccgccagacaatcggatattgcaggtgtttatggt
atcggtgcagaaatcgcccaatcagtctatcaatggtttcgtactccagccaatcaaagc
ttaatatcccgtatccaggctattggtttagaattagcaaacagcacagcagcccaatct
gtgggcgaaattaatcaaaaatttgctggtaaaacctttgttcttactggcacattacca
actttaaaacgcgatgaagccaaagctttaattcaaaaatcaggtggtaaaattactgat
tcaattagcagaaaaacagactttttagttgtaggtgcagatgccggttctaagttagag
aaagcgcggaagttggaaattagccaattgactgaggcgcaattattggcaatgctgaca
gaatag
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