Dendroctonus ponderosae (mountain pine beetle): 109544686
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Entry
109544686 CDS
T04899
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3 isoform X2
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03018
RNA degradation
dpa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109544686
09123 Folding, sorting and degradation
03018 RNA degradation
109544686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpa03019
]
109544686
03041 Spliceosome [BR:
dpa03041
]
109544686
Messenger RNA biogenesis [BR:
dpa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109544686
mRNA degradation factors
5'-3' decay
Lsm complex
109544686
Spliceosome [BR:
dpa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109544686
Complex C
U2 snRNP components
109544686
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
LNS2
TIG_SUH
RimP_C
Peptidase_M16_M
DUF8043
Motif
Other DBs
NCBI-GeneID:
109544686
NCBI-ProteinID:
XP_019770567
UniProt:
J3JUY1
LinkDB
All DBs
Position
Unknown
AA seq
101 aa
AA seq
DB search
MADELDVIPSITVKEPLDLVRLSLDEKIYVKMRNDRELKGRLHAYDQHMNMILSDVEETI
TTVEIDEETYEEVYKSTKRNIPMLFVRGDGVILVSPPIRTS
NT seq
306 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgagttagatgttattccatctatcacagtgaaagaaccgcttgatttagtt
cgtctaagtttagatgagaaaatctatgtgaaaatgaggaatgatcgagaactaaagggc
aggttacatgcctatgatcaacacatgaacatgattcttagtgatgtcgaagaaacaatc
accaccgtggagattgatgaggaaacatatgaagaggtatacaagtccaccaaaagaaat
atacctatgctttttgttcgtggagatggagtaatccttgtctcgccacctataagaacg
tcgtag
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integrated database retrieval system
