Dendroctonus ponderosae (mountain pine beetle): 125503716
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Entry
125503716 CDS
T04899
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125503716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpa03041
]
125503716
Spliceosome [BR:
dpa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125503716
Complex C
U5 SnRNP specific factors
125503716
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Dynamin_N
Roc
Ras
Septin
TniB
Motif
Other DBs
NCBI-GeneID:
125503716
NCBI-ProteinID:
XP_048520410
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All DBs
Position
Unknown
AA seq
969 aa
AA seq
DB search
MDADLYDEFGNYVGPELDSDDEEEEEREQPDEDEQPEYDDERMEDEPQPMAIVLHEDKQY
YPSSLQVYGPDVETIVQEEDAQPLDVPLIEPVKKKKFQLKEQDLPETTYSMEFLADMMDN
TSLIRNVALVGHLHHGKTTFVDCLIRQTHPTYQDNEEKNLRYTDLLFTEQERGCSIKSVP
VTLLLQDIKNKSYLMNIFDTPGHVNFSDEVTAAMRLCDGIVLFIDAAEGVMLNTERLLKH
AVQEQMQITVCINKIDRLMLELKLPPQDAYYKLRHIVEEINGLLTLYSDDANPQIVSPVL
GNVCFASSQYGVCFTLKSFANIYNLYHGDVNVDEFSKRLWGDIYFNPKNRKFTKKAPHNS
AQRSFVEFILEPLYKVFAQVVGDVDSTLPKVLEELGIKLTKNEMKLNIRPLLRLVCNKFL
GDFNGFVNMCVEHIKSPLDNAKTKIDYIYTGPHSSKVYDDMIHCDQEGLLMVHSSKMYPT
EDCTFFQVLGRVMSGTLHAGTDLRILGENYTLQDEEDSRVLTIGRLWVYESRYKVELNRV
PAGNWVLIEGIDQSIVKTATITDLSINDDLYIFRPLKFNTQSIIKIAVEPVNPSELPKML
DGLRKVNKSYPLLTTRVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCE
TVVETSSLKCFAETPNKKNKLTMIAEPLEKGLAEDIENESVQIGWNKKKLGEFFQTKYDW
DLLAARSIWAFGPDNTGPNILVDDTLPSEVDKGLLSSVKDSIVQGFQWGTREGPLCEEPI
RNSKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYLFVEVQAPADCVS
AVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHW
QIVPGDPLDKSIIIRPLEPQPATHLAREFMIKTRRRKGLSQDVSINKFFDDPMLLELARQ
DVMLNYPLL
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagatttatacgatgaatttggtaattatgtaggcccagaattagatagtgat
gatgaggaagaagaagaacgtgagcaaccagatgaggatgaacaaccggaatatgatgat
gaacgcatggaagatgaaccacagccaatggcaattgtgcttcatgaggataagcaatat
tatccttcatcattgcaagtgtatgggccagatgttgaaactatagtacaggaagaggac
gctcaaccgttagatgtccctctaatagagcccgttaagaagaaaaagtttcaattgaaa
gaacaagatttgccggaaaccacgtacagtatggagtttctggctgacatgatggataac
acgtcgctgattcgtaatgtagctttggtaggtcacttacaccatggcaaaaccactttt
gttgattgtctcattaggcaaactcatcctacttatcaagataatgaagagaaaaatctg
cgatacacggaccttctttttactgaacaagaacgtggatgctcaatcaagtctgtccct
gtaacattacttttgcaagatattaaaaataagagctacctgatgaatatttttgacact
cctggtcatgtgaacttttctgatgaagtaacagcggccatgcgtctctgtgacggtatt
gtgctttttattgatgccgcggagggtgtgatgttgaacacagaacgtttattaaagcat
gccgtacaagaacaaatgcaaattacggtgtgcattaacaaaattgacagactaatgctt
gaactgaaattaccccctcaagatgcttattataaactgaggcatattgttgaagaaatc
aatggcttactgacgctgtactccgatgacgcgaatccgcaaattgtttcaccagtgtta
ggaaatgtatgttttgctagttcccaatacggagtatgtttcacgttgaaatcgtttgcc
aatatttacaacttgtatcatggagatgtcaatgtggacgagttttccaagaggttatgg
ggagatatttactttaatcccaaaaatcgaaaatttacgaaaaaagctccccataattca
gcgcaaaggagttttgttgaatttatattagaaccactttacaaagtgttcgctcaggtg
gtaggagatgttgattctactttaccaaaagtactggaagaacttggaattaaactcacc
aaaaatgaaatgaagttgaatattcggccgctactcaggcttgtttgcaataagtttcta
ggagattttaatgggtttgtgaatatgtgtgttgaacatatcaaatcaccgctggacaat
gcaaaaactaaaatcgattacatttacacgggcccacattcaagcaaagtatatgatgat
atgattcattgcgaccaagagggacttttaatggttcatagctctaaaatgtacccaact
gaagactgcacattctttcaagttttgggtagagtaatgagcggtactctacatgccggt
actgatcttcgaatattaggagaaaactacaccttgcaggacgaggaagattccagagta
ttaactattggccgattgtgggtttatgagtccaggtataaagtggaacttaatcgtgta
cctgcgggtaattgggtacttatcgaaggaatagatcaatccatcgtcaagacagctacc
attactgatctatcaataaatgatgatttatacatttttagaccacttaagtttaatact
cagagtattataaaaattgcagtcgaacctgtaaatccctccgaattgccaaaaatgttg
gacggattaagaaaggtaaataagtcctatcccttattaaccacgagagttgaagaatct
ggggaacatgtcgtgttgggtactggtgaactttatttggactgcgttatgcacgactta
agaaaaatgtattccgaaatcgacataaaagtggctgatccagtagtagcattctgcgaa
acagttgttgaaacgtccagtttaaagtgttttgcggaaacaccaaataagaaaaataaa
ttaaccatgattgcggaacctctagaaaagggtctggcagaggacattgaaaatgagagt
gtccaaattggctggaataaaaagaagttgggagaattcttccagaccaaatatgattgg
gatttacttgctgctcgaagtatatgggcgttcggaccagacaacaccggtcccaacatt
ctggtagatgacacgcttccttccgaagtagataaaggcctgctgagttcagttaaggat
tcaattgttcagggtttccaatggggaactcgagaagggccgttgtgtgaagaaccgatc
agaaacagcaaatttaaaattctcgatgctgtcatagcacaagagccccttcatagaggc
ggtggacaaatcattcctacagctagaagagtggtgtattcagccttcttgatggccacg
ccccgcttaatggaaccgtacttatttgttgaagtacaggcaccagctgattgtgtatcg
gctgtatatacagtcttagcaaagaggcgtggtcatgtgactcaagatgctccagtgccc
ggatccccattgtataccatcaaagcatttattccggctattgatagtttcggatttgaa
actgacttgagaactcacacacaaggacaggccttttgcctctccgtgtttcatcattgg
cagattgttccgggtgatcctttggacaaatcaattattattcgtcctctagaacctcaa
ccagccacccacttggcgcgagaattcatgattaagactagacggcgaaaaggtttgagt
caagacgtctctattaataagttctttgatgatcctatgttgctcgaattagcacgacag
gatgtgatgttaaactatccactcctttaa
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