Dyadobacter pollutisoli: ON006_18030
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Entry
ON006_18030 CDS
T09794
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dpf
Dyadobacter pollutisoli
Pathway
dpf03030
DNA replication
dpf03410
Base excision repair
dpf03420
Nucleotide excision repair
dpf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ON006_18030 (ligA)
03410 Base excision repair
ON006_18030 (ligA)
03420 Nucleotide excision repair
ON006_18030 (ligA)
03430 Mismatch repair
ON006_18030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dpf03032
]
ON006_18030 (ligA)
03400 DNA repair and recombination proteins [BR:
dpf03400
]
ON006_18030 (ligA)
Enzymes [BR:
dpf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ON006_18030 (ligA)
DNA replication proteins [BR:
dpf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ON006_18030 (ligA)
DNA repair and recombination proteins [BR:
dpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ON006_18030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ON006_18030 (ligA)
MMR (mismatch excision repair)
DNA ligase
ON006_18030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ON006_18030 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
BRCT_2
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
WAC09651
UniProt:
A0A9E8N6U7
LinkDB
All DBs
Position
complement(4406370..4408460)
Genome browser
AA seq
696 aa
AA seq
DB search
MSPEQKIQELTDQLNHYNYRYYQDSVSEISDFEFDQLLKELKALEDQYPDFRLGDSPTQR
VGGAITKSFNAVYHRYPMLSLDNTYNEQELRNFDERVRKGLDGEPYEYICELKFDGISLS
FTYENGVLVRGVTRGDGTRGDEITNNVKTIRSLPLRVKAEDQPPIFEVRGEGFMPITSFQ
KLNEEMETLGENQYANPRNAASGSFKLQDSGETARRALDCYVYTFLTDTEFFKSHEESLL
GLKSWGFNVSPGWKKVSNIDEVIAYIHEWEDKRMTLPLATDGIVIKVNSFEQQRELGFTA
KSPRWAISFKYKAENKPAILRSVNYQVGRTGAVTPVANLCDLTERALPYNKVKGVHLSGT
RVKRATLHNANELERLGIQLGDTVFVEKSGEIIPKITGVDVSQRELYPTTPIIFPTHCPE
CNSELQRNEGEVAFFCPNDSHCPPQLKGRIEHFIHRKAMNIESLGEGKIELLFDLNMVRT
PADLYDLTYENLLGLEKTIVNEETGKTKIISFREKTVENILKGIDLSKTVPFKNVLFALG
IRFVGATVAEKLAAYFKSIQALRTATYEQLTAVPEIGGRIALSIESYFSIPENQDLVERL
EKAGLQMESDEKPVELESDMLEGKTFVISGVFENFERDDLKMKIEVNGGRVLSGVSGKLN
YLLAGANMGPAKLEKARKLGVTILSEEEFLAMIENK
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgagtcccgaacagaaaatccaggagctaaccgaccagctgaaccattacaactaccga
tattaccaggatagcgtatcggaaatttcggattttgaatttgaccagttgttaaaggaa
ttgaaagcgctggaagatcagtatcctgatttcagattgggcgattccccgactcagcgg
gttggcggcgccattaccaagagctttaatgcagtttatcaccgctatccgatgttgtcg
ctggataacacttataatgagcaggagctccggaatttcgatgagcgtgtgcggaaggga
ttggacggggagccgtacgagtacatctgcgaactcaaatttgacgggatttcattgagt
tttacctacgaaaatggcgtgctggtgagaggggtaacccgcggcgacggtacccgtggc
gacgaaattaccaataatgtgaagaccattcgctccttgccactccgggtaaaagcagaa
gaccagccaccgatttttgaagtacgcggcgaaggttttatgcccatcacttcttttcag
aaattgaatgaagaaatggaaacgctgggcgaaaaccagtatgccaatccccggaatgcg
gcttcgggctcattcaaattgcaggattcaggcgaaacggcaaggcgggcgctggattgc
tatgtttatacttttctgactgacacagaattctttaaaagtcatgaagaaagcctgttg
ggactgaaatcctggggatttaatgtttcgccgggctggaaaaaggttagtaacattgat
gaggtgatcgcctacattcatgaatgggaagataaaaggatgacattaccgctggcgacg
gatggtatcgtgatcaaagtcaattcctttgagcagcagcgtgaactgggttttacggcc
aaaagccctcgctgggccatttcatttaaatacaaagcagaaaacaaacctgcgatcctg
cggtcggtgaactatcaggtgggccgcacgggagctgtgacgcccgtcgccaatttgtgt
gatctgactgaacgcgcacttccatataataaagtaaaaggggtgcatctttcgggtacc
agggtgaaaagggccacattacacaatgcaaacgagctggaaaggcttggtatacagctt
ggtgatacggtttttgttgagaaaagcggcgagattatcccgaaaataaccggcgtagat
gtcagccagcgcgaattataccctactacaccaatcatttttccaacacattgtcccgaa
tgtaattctgaactgcagcgaaatgaaggagaagtggcctttttctgtccgaatgacagc
cattgcccgccacaactgaaaggcaggatcgagcactttattcatcgtaaggccatgaac
attgaaagtttgggcgagggaaaaattgaattgctcttcgacctgaatatggtgcggaca
ccggccgatctttatgaccttacctatgaaaatttgctaggcctcgaaaaaaccattgtc
aatgaagaaacaggcaagactaaaatcatcagtttcagggaaaaaacggttgaaaatatc
ctgaaaggtattgatctgtcaaaaacggtaccattcaaaaatgtgctattcgcgctcgga
atcaggtttgtaggagctacggttgcagaaaaacttgctgcctatttcaaatccattcag
gcattgcggacggccacttatgaacagttgacggcggtaccggaaatcggtggccgcatt
gcattgagtattgaatcctatttcagcattcccgaaaatcaggatctggtggaacggctc
gaaaaagcggggctacaaatggagagcgacgaaaaaccagtggagctggaaagcgatatg
ctggaaggaaagacgtttgtgatctccggtgtttttgaaaatttcgaaagggacgatttg
aaaatgaaaattgaggtgaatggcggacgggtccttagcggggtgtcaggaaagctgaat
tacttacttgccggtgcaaatatgggacctgccaagctcgaaaaagcacgaaaactgggc
gttaccattctgtccgaggaagaatttttagcaatgattgagaataagtaa
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