Deinococcus psychrotolerans: EHF33_13440
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Entry
EHF33_13440 CDS
T07550
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dph
Deinococcus psychrotolerans
Pathway
dph03030
DNA replication
dph03410
Base excision repair
dph03420
Nucleotide excision repair
dph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EHF33_13440 (ligA)
03410 Base excision repair
EHF33_13440 (ligA)
03420 Nucleotide excision repair
EHF33_13440 (ligA)
03430 Mismatch repair
EHF33_13440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dph03032
]
EHF33_13440 (ligA)
03400 DNA repair and recombination proteins [BR:
dph03400
]
EHF33_13440 (ligA)
Enzymes [BR:
dph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EHF33_13440 (ligA)
DNA replication proteins [BR:
dph03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EHF33_13440 (ligA)
DNA repair and recombination proteins [BR:
dph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EHF33_13440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EHF33_13440 (ligA)
MMR (mismatch excision repair)
DNA ligase
EHF33_13440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EHF33_13440 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
AZI43627
UniProt:
A0A3G8YHD6
LinkDB
All DBs
Position
1:2723515..2725617
Genome browser
AA seq
700 aa
AA seq
DB search
MSAERQTPPQDLSQDRKSPHKNLEDGPTLPSERYLWLMDELARHNRLYHEQDAPEIADHD
YDALTREARALEAEHPDWLTEAPSPAQAVGGLPSSAFLPVNHPTPMTSLDNVFDDAELRG
FQDKLSRSLNITPEAADFAYTCELKIDGLSVNLYYLDGELQWAATRGNGVTGEIVTAQVL
TIAGLPQKVEGLTGELEVRGEVYLSREEFAAFNERAEELGTQPLKNPRNGAAGALRQKDP
SVTRSRNLSAILYALGKRDGVPAKTQWEVLEWLRARGFPVSEYSKQVRGIEEAVQYHADL
LAVRGDLPFDVDGTVIKLNDLHLQSESGFTSRAPKWAIAYKFPVEEAQTILESVSINVGR
TGKLAPLAHLSPRLLEGSTVSKATLHNEDFIRDLDLHIGDTVLVRKAGGVIPEIVRVLPE
LRPEGAVPFVFPDVCPICTFPAVREEGDANRYCTNPECPAKLYEGLRYFVSRGALDIRGI
GEKLTRQLLDTGLVKDAADFYALTAEQLSGLERGGDKKAANVLAQLAESKAKPLWRLINA
LGMAGVGDRNAKALARAFGSLAALEAAAPEQIEAVPGLGGVLAQRVSSELASERLQRLIA
KLRAAGLGQQVSETESRTAELAGLNFVLTGSLSRPRDVLKAALEARGARVTGSVTGKTSY
LVAGEDAGSKLSRAQELEIPVLDEAGLAALLEEKGAAGLE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctgaaaggcaaacacccccgcaagatttgtcacaggacagaaaatcgccgcac
aagaacttggaggatggcccgaccttaccgtctgaacgttacctgtggctgatggacgaa
ctggcccgccacaaccgcctttatcatgagcaggacgcgcccgaaattgccgaccatgac
tatgacgccctgacccgtgaggcccgcgccctggaagccgagcatcccgattggttgacg
gaagcgccctcgcctgcccaagccgttggtggactgcccagcagcgctttcttgccggtc
aaccaccccaccccgatgaccagtctggacaatgtcttcgatgacgcggagttgcgcggc
tttcaagacaagctctcccgctcgctcaacatcacgccggaagccgccgacttcgcctat
acctgcgagctcaaaatcgatggtctgagcgtcaacttgtattacctggacggcgaactt
cagtgggccgccacacgcggcaacggcgtgaccggcgaaatcgtcaccgcgcaggtcttg
accatcgcgggtttgccgcagaaagtagaaggcctgaccggcgaactggaagtgcgcggc
gaagtgtacctcagccgcgaggagttcgccgccttcaacgagcgggccgaggaattgggc
acgcagccgctcaaaaatccccgcaacggagccgccggagcgctgcgtcaaaaagacccg
agcgtgacccgttcgcgcaatctcagcgctattttgtacgcgctgggcaagcgtgacggt
gtgccagccaagacccagtgggaggtgctggaatggctcagggcgcgtggctttccggtc
agcgagtattcaaagcaggttcgcggcatcgaagaagcggtgcagtaccacgccgatttg
ctggcggtgcgcggcgacttgccgttcgacgtggacggcaccgtcatcaagctcaatgac
ctgcacctccaatctgaatccggcttcaccagtcgggcacccaaatgggcgattgcctat
aagtttccagtggaagaagcccagaccattttggaaagtgtcagcatcaacgtggggcgc
accggcaaactggctccgctggcccacctttcgccgcgcctcttggaagggagcaccgtc
agcaaagccacgctgcacaacgaagactttatccgcgacctcgatttgcacattggcgac
acggtgctggttcgcaaagcgggcggcgtcatccccgagatcgtgcgggtgctgccagaa
ctgcgccccgagggagctgtgccgttcgtgtttccggatgtctgccccatctgcaccttt
cccgccgtgcgtgaggaaggcgacgccaaccgctactgcaccaatcccgagtgcccggcc
aaactctacgagggtctgcgctacttcgtctcacgcggtgcgctggacattcgcggcatc
ggtgaaaagctgacccgccagctcctagacactggactggtcaaagacgccgccgacttt
tacgcgctcaccgccgagcaactttccggcctggagcgcggcggcgacaaaaaagccgcc
aacgtactggcgcagctcgcggaaagcaaagccaaacccctgtggcgcttaatcaacgcg
ctgggcatggcgggtgtcggagaccgcaacgccaaagcgctggcccgcgccttcggttcg
ctggccgcgctggaagccgccgcgcccgagcagatcgaagcggtgcccggactcggcggc
gtgctggcccaacgggtcagtagcgaactggcttccgagcggttgcaacgcttgatcgcc
aagctccgcgccgccggactgggccagcaagtcagcgaaaccgaaagccgcacggcggaa
ctcgccggcctgaacttcgtgctgactggcagcctcagccgcccgcgcgacgtgctgaaa
gccgctctcgaagcgcggggcgctcgcgtgaccggcagcgtgaccggcaaaaccagttat
ctggtggcgggcgaggacgccggaagcaaactcagccgcgctcaggaacttgagattccg
gtgctggacgaagcgggcctcgcggcgctgctggaggaaaagggagcggcagggctggag
tga
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