Pseudodesulfovibrio piezophilus: BN4_10338
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Entry
BN4_10338 CDS
T02481
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dpi
Pseudodesulfovibrio piezophilus
Pathway
dpi03030
DNA replication
dpi03410
Base excision repair
dpi03420
Nucleotide excision repair
dpi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN4_10338 (ligA)
03410 Base excision repair
BN4_10338 (ligA)
03420 Nucleotide excision repair
BN4_10338 (ligA)
03430 Mismatch repair
BN4_10338 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dpi03032
]
BN4_10338 (ligA)
03400 DNA repair and recombination proteins [BR:
dpi03400
]
BN4_10338 (ligA)
Enzymes [BR:
dpi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN4_10338 (ligA)
DNA replication proteins [BR:
dpi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN4_10338 (ligA)
DNA repair and recombination proteins [BR:
dpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN4_10338 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN4_10338 (ligA)
MMR (mismatch excision repair)
DNA ligase
BN4_10338 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN4_10338 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
DNA_ligase_ZBD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CCH47576
UniProt:
M1WJA9
LinkDB
All DBs
Position
358673..360691
Genome browser
AA seq
672 aa
AA seq
DB search
MASSHVATRVHSLREKIEYHNHRYYVMDAPEITDAEYDELFRKLIELEKEYPEFDDPNSP
TKRVGGEPAEGFSPYEHSMRMYSLDNAMSLDGWDAFADRIVANTGRSDALYWADPKMDGL
ALEVIYEKGRYVRAATRGDGLIGEDVTGNMRTVMNLPMVLKGKIVPDRLEVRGEVVISNQ
DFAILNQKQRDAGSKVFANPRNAAAGSIRQLDSKVAASRPLRFLAYGIGTIEWSTPLFSW
NSQAEIMSGLSELGFSIPPEAKLCNSKQEVAEYFLDLMERRSSLPFEIDGVVAKLNSLDL
QRTLGYTSRAPRWALALKFPAYQAKTRLNSIRIQVGRTGVLTPVAELEPVSLAGVVVSNA
TLHNKGYIEERDFRIGDNVLIQRAGDVIPQVLSVDKAERPDDAVPYQFPSNCPVCMSVAI
EDGEAVRCVNETCPAKAVQQIIHFVSKAGLDMEGVGKKWVERLALDGVLKTPADLFFLEK
TTLLKYEGMGDKSADKFIAAVEKRRREAPLWRLIAGLGIRHVGEQTARMLGAHFTDLEAI
GLVTREELQDLEDIGPIVAESLFEYFQRPSTRELIEKFKAAEFWPQGSISTAISEQELRP
LAGKVFLFTGSLPDMSRTQAQALVEAQGASAAKSISKKVDYVVVGDKAGSKRAKAEKMGL
EILDSDAFKALL
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcacgtcgcaacgcgcgttcactcgttgcgtgaaaaaatcgaatatcac
aatcatcgttattacgtcatggatgcaccggaaattactgatgctgaatacgatgaactc
tttcgcaagctgattgaactggaaaaggaatatcctgagtttgatgacccgaattcccca
acgaaaagagtaggaggggaaccggctgaagggttttctccctatgaacattccatgcgg
atgtatagcttggataatgctatgagccttgatggatgggatgcctttgcagatcggatc
gttgcgaatacagggcgatcagacgcattatactgggctgatccaaaaatggatggtctt
gctcttgaggtcatctatgagaagggccgctatgtcagagccgcgactcggggagatggg
cttatcggtgaggatgtgacggggaatatgagaactgtcatgaatctgcccatggttttg
aaagggaaaattgttcctgaccgacttgaggtccgtggtgaagttgtcatatcaaatcaa
gattttgccattctcaaccagaaacaacgagatgctggttccaaagttttcgcgaatcct
cgtaatgctgctgccgggtcaatcagacagcttgattccaaagttgcagcatcacgtcct
ctccgattccttgcgtacgggattgggacaatcgagtggagcacacctcttttttcgtgg
aatagccaagcggaaataatgagcgggctgagcgagttgggattttccattcctcctgaa
gcaaaactctgcaattcgaagcaggaagttgccgaatattttcttgatcttatggaacgt
cgttcctcattgcccttcgaaatagatggggttgtcgcgaaactcaatagtctcgatcta
caacgaactttgggatatacttctcgtgccccaaggtgggcgctggcactgaaattcccg
gcttatcaagccaaaacccgattgaattcaatcagaattcaagttggcagaactggtgtt
ttgacgccggttgcagagcttgagccggtatccttggctggagtcgtggtttctaatgca
acgctacataataaaggctacattgaagagcgtgattttcgtatcggagataatgttttg
atacaacgcgcaggggatgttattcctcaagttttgtccgtagataaagcagagagaccg
gacgatgctgtcccatatcagtttccaagtaactgtcctgtttgcatgagtgtcgctata
gaggacggtgaagctgtgaggtgtgtcaatgaaacatgcccagccaaagcggttcagcag
atcattcattttgtttccaaggcagggctggacatggagggggtcggtaaaaaatgggtc
gaacgccttgcgttggatggtgtgttgaaaactccggcagatcttttctttttggagaag
acaactctgctcaagtatgaaggcatgggtgacaagtctgccgataagtttattgcggct
gtagaaaaaagacggcgagaagctcctctctggcggttgattgctggattgggaatacga
catgtgggagaacagactgctaggatgctgggagctcatttcacggatttggaagcgatt
gggttggtaacacgcgaagaattacaggatttggaagatataggaccgatcgtagccgag
agtctctttgaatattttcagcgtccttcaacccgagagttgatagaaaaattcaaggcc
gctgaattttggccacaaggcagcatatctactgccatttcggaacaggaattacgaccg
ttggcaggtaaagtgtttctttttaccgggagtcttcctgacatgtcgcgcactcaggct
caagcgcttgtggaggctcaaggagcgagcgcagcgaaatcgatttcaaaaaaagttgac
tacgtggtggttggagacaaagctggatcaaagagggccaaagcagaaaaaatggggctt
gagatacttgattctgatgctttcaaagcgttactttaa
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integrated database retrieval system
