KEGG   Dryobates pubescens (Downy woodpecker): 104300566
Entry
104300566         CDS       T08526                                 
Symbol
BRCA1
Name
(RefSeq) LOW QUALITY PROTEIN: breast cancer type 1 susceptibility protein
  KO
K10605  breast cancer type 1 susceptibility protein [EC:2.3.2.27]
Organism
dpub  Dryobates pubescens (Downy woodpecker)
Pathway
dpub03440  Homologous recombination
dpub03460  Fanconi anemia pathway
dpub04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:dpub00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    104300566 (BRCA1)
  09124 Replication and repair
   03440 Homologous recombination
    104300566 (BRCA1)
   03460 Fanconi anemia pathway
    104300566 (BRCA1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:dpub01009]
    104300566 (BRCA1)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dpub04121]
    104300566 (BRCA1)
   03036 Chromosome and associated proteins [BR:dpub03036]
    104300566 (BRCA1)
   03400 DNA repair and recombination proteins [BR:dpub03400]
    104300566 (BRCA1)
Enzymes [BR:dpub01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     104300566 (BRCA1)
Protein phosphatases and associated proteins [BR:dpub01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     104300566 (BRCA1)
Ubiquitin system [BR:dpub04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    104300566 (BRCA1)
  Multi subunit type E3
   BRCC complex
    104300566 (BRCA1)
Chromosome and associated proteins [BR:dpub03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     104300566 (BRCA1)
DNA repair and recombination proteins [BR:dpub03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     104300566 (BRCA1)
    BRCA1-A complex
     104300566 (BRCA1)
    BRCA1-B complex
     104300566 (BRCA1)
    BRCA1-C complex
     104300566 (BRCA1)
    BRCA complex
     104300566 (BRCA1)
   FA (Fanconi anemia) pathway
    Downstream FA components
     104300566 (BRCA1)
SSDB
Motif
Pfam: BRCT_assoc BRCT zf-C3HC4 zf-C3HC4_4 zf-C3HC4_2 BRCT_2 zf-RING_UBOX zf-RING_2 zf-RING_6 RING_XB3-XBAT31 zf-C3HC4_3 BRCT_3 zf-Nse zf-RING_5 Prok-RING_4 zf-RING_4 zf-RING_10 Zf_2nd_IFT121 DUF2018 zf-rbx1
Other DBs
NCBI-GeneID: 104300566
NCBI-ProteinID: XP_009899163
LinkDB
Position
Unknown
AA seq 1683 aa
MDSSVMSIGDVQNVLSAMQKNLECAICLDVVKEPVSTKCDHVFCRFCIFKLFSEKKKGVV
ACPLCKTEVTKRSLKENSRFKQLIEALLETIHAFELDTGVKILNSHDLPKTSTEATAADL
LCKEHSVIQSKGFRNRKKGIKGNGQETCTLVYFSPGPFXITPLCSKQCRLRNKTQKCDPE
KGLYIEFGSDSSEELFKQQSNARSEDKAGLHISSQEQKSAEEGKGCCLNAQPDKLAAKGG
IHPDIPGESDFSKEGLSKRSTRSTTECAKPVQVNVTGCQSSPLNVAVELLREQCDRAGPE
SPQRGDTSSFQKTEAANAEQTWCSSKSKEFGLKDSSESSLDESKELDSVVKIVEMYKPEN
DSFCENELALEKLLQPEMLHCTALVEVSRKRLKRSIEKVNEWFSKSNEFLTSSSSQDNSA
GAAVLDSGDVCLSDRDSCISEKTDPMEIAVDEGNRESRPTAGSIKDKIFGKTYERERKST
PLTIWRDILPSTKQEVVGSAEKCLNDSSKDRLKRKRKTVCVLQPEDFIKQKDTEWADGSP
QSVNCCFGGAEKKRHDERSAVNESHLSENREGNAVAALEEGGGSIQKKATAKVTGKHCDR
ELELSKSDQKSTKKSTAAKRCRSSTRAMCALQLVLDRNSLSPDPAEPQIDSYPSSEEARK
VDCEQRQVRCSRRLRLLSGEMTKEMGKGAVVKGARTSGSDGEEPFGVQSNVLVHTSEHKD
LCEPQGVLSHKLLPGLQADKMLVSLKNSPDAEDAGRSLFNPPAMCQRSNCSSAPDAGVQG
DEIQGSPFLLQSPSVTGVQPPDPAEEVTELCIPQSSGHDIQSVPEDLKTEKLPVAKAAWD
LTKEAADSELDTQCLRGIFRQSKRLSFSLYPALSQGCAAEGAAAETLKVLCADQIENEHS
KHLNTENFQEDKAAESLSRICEKEELKTCDSVCVSPVTCFDGNTESMDIVEHEEDVSQFA
NQETLTPVRVGAARIENENRLPFHLPALRFAVSAAVGIGGELRQNAVRSPSSQSDQSNAA
ELPFRTAAAKTDEEICFSSGSNQAHKAKVVDSKGPVLHSQSRSMISAAPEQRPAEFRGEV
IGKKSSKREQKPVKGNKGEAAQRGGTGLPECLVPEAPEELLKGNGGFTHLSETADGLLCS
DDDTEENSSFSETDRREKSAVFVKRSDCALMKDMHNRNADSEMNSQGVQRSRRRVQKLPS
SDEESSESEDLPCFQTLIFGKSVSTPLQDNKQVASVAEFSASPSNGSHDDSNVQKLPKAA
PGNGCLSLSQESECSINLFSSQSNNSEESADGAQEPKKLSAQANGPKQVNNESESKEVSR
SCNGRLKRSKTNFKDECQEDPNVGANLGTNQVSSGYDSETSNVEDSCGLLSQGEILTTQQ
KNAMQNNLKKLQEEMAVLEAVLQQHGSQDSQFPPVHGELPRSSSKGTFGMEQRSQERENA
DEQKSGTRLNSPPVVSNLLGNVTGSPSNSPSSAKLLHPSIVASGLKQSERLVVQKFARKT
RSTLSDHITEGTTHVIMKTDKELVCERTLKYFLGIAGRKWVVSYQWVIQSFEEGRILDEE
NFEVRGDVINGRNHQGPKRARESLTEKIFKDFEICCCGPFTGMTTEHLEWMVELCGASVV
KQLHLFTHTKNSAIVVVQPDAWTENTDYRAIQQKNSIAMVTREWVLDSVACYECQELDAY
LVS
NT seq 5052 nt   +upstreamnt  +downstreamnt
atggactcctcagtgatgtctattggagatgtacaaaatgtgctctcggctatgcagaag
aatttggagtgtgcaatatgcttggatgtggtcaaagagccagtttcaacaaaatgtgat
catgtcttctgcaggttctgcatattcaaactcttcagcgaaaagaaaaaaggtgtggta
gcgtgtcctctgtgcaagactgaagttactaagagaagtctgaaggaaaattccagattt
aagcagctaattgaggcgttgctggaaactatccatgcgtttgagcttgacactggagta
aagattttaaacagtcatgaccttcctaaaacatccacggaagccactgccgctgatttg
ctgtgtaaagagcattctgtcatccaaagcaagggcttcagaaacaggaaaaaaggcatc
aaaggaaatggacaagaaacctgcaccttggtatacttttcccctggtccattttaaata
actcctttgtgttctaaacagtgtcgcctaagaaacaaaacccagaagtgtgaccctgaa
aaggggctttatattgagtttggctctgattcatctgaagagctttttaaacagcaaagc
aatgccagatcagaagacaaagcagggcttcacatttcttctcaagaacagaagagtgct
gaggagggaaaaggctgttgtcttaatgcacagcctgacaagctggctgctaaaggagga
attcacccagatatcccaggtgaaagtgatttctctaaggaaggcttgagcaagagaagt
actcggagcaccactgaatgtgccaaacctgtccaagtgaatgtgaccggatgccagagc
tctcctttaaatgtggcagtagagctgctcagggagcagtgcgacagagcaggtcctgag
agccctcagagaggggacacatcttcctttcaaaagacagaagcagccaatgcagaacaa
acttggtgcagtagcaaaagcaaagagtttggcttaaaagatagctcagagagcagtttg
gatgaaagcaaagaactagatagtgttgtgaaaattgtggaaatgtacaaacctgagaat
gattctttctgtgaaaatgaacttgctctcgagaaactacttcagccagagatgcttcac
tgcactgccctggttgaagtctctaggaagagactgaagagaagcattgaaaaagtcaat
gaatggttttcaaaaagcaatgagtttctgacttccagttcttcccaggataattctgct
ggagcagctgttttggacagtggagatgtgtgtttgtctgacagagattcctgtatttca
gaaaagactgaccctatggaaattgcagtggatgaaggaaacagagagtcaagaccaacg
gcaggtagcatcaaagacaaaatatttgggaaaacgtacgagagagagaggaagtcaact
ccccttactatctggagggacattttacctagtacaaaacaggaagttgtgggtagtgct
gagaagtgcttgaatgactccagcaaagacagactcaaacgaaaaaggaagactgtttgt
gtcctgcagcctgaggatttcatcaagcaaaaagatacagagtgggcagatgggagccct
caaagtgttaactgctgctttggaggtgctgagaagaaaagacatgatgaaagatctgct
gttaatgagagtcacctctctgagaatagagagggtaatgcagtggcagcgcttgaggaa
ggaggaggatccatacagaagaaagctactgcaaaggtgactggcaagcactgtgacaga
gagctagaactgagtaagtctgatcaaaaaagcactaaaaaaagcactgcagcaaaaaga
tgcaggagttctactagagcaatgtgtgctctgcagttagtgctggataggaactctctt
tcccccgatccagcagagccacagatcgacagctacccaagcagtgaagaagcaaggaaa
gtcgattgtgagcaaagacaagtcaggtgcagcaggaggcttcggttactgtctggagaa
atgacaaaagaaatgggaaaaggagcagtagttaagggagcaaggacctctggcagtgat
ggtgaagagccttttggtgtccaaagcaatgtgttagttcacacttctgaacacaaagac
ctgtgtgagccccagggtgtgctgagtcacaagctactccctggtctgcaggcagataaa
atgctggttagtctaaagaattcaccagatgctgaagatgctggaaggagtctcttcaat
cctccagctatgtgtcagcgttcaaactgtagttctgcacctgatgcaggtgttcaagga
gatgaaatacaagggagccctttcctcctacagtctccatcagtgactggtgtgcaacct
cctgacccagctgaagaggtgactgaattgtgcattccccagagcagtggacatgatata
caaagtgttccagaggacttaaaaactgaaaagttgccagtggctaaagcagcctgggat
ttgactaaggaagctgcagatagtgagttagacacacagtgcctgcgaggtatatttagg
cagtccaaacgtctgtcattcagcctttaccctgccctctcgcaggggtgtgcagcagaa
ggggctgctgctgaaactttaaaggtattgtgtgctgatcagatagaaaatgagcatagt
aaacatttaaacacagaaaactttcaagaagacaaagctgctgaaagcttgagtaggatt
tgtgagaaagaggagcttaagacctgtgattctgtttgtgttagtcctgtgacttgcttt
gatggcaacactgaaagtatggacatagtggaacatgaagaagatgtttcacagtttgca
aatcaagagactctgacaccagtaagagtgggtgcagctaggattgaaaacgagaacaga
ttgccttttcacctccctgctctccgttttgcagtgtcagctgctgtagggataggaggt
gagttgaggcagaatgcagtcagaagtcccagcagtcagagtgatcagagcaacgcagca
gagctgcctttcaggacagctgctgcaaaaacagacgaggagatctgcttcagttcagga
agcaatcaagcacacaaggccaaagttgttgacagcaaaggtccagtgctacattctcaa
tccagatcaatgatttctgcagctcctgagcagagacctgctgaattcagaggtgaagtc
attgggaaaaaaagtagcaaaagagaacaaaaacctgtaaagggaaataaaggagaggca
gcccaaagagggggcacaggactgcctgagtgcttagttccagaggctccagaagaactc
ctgaaagggaatgggggttttacacatttgtctgaaactgctgatggcttactgtgctct
gatgatgatactgaggagaacagcagcttttctgagactgataggagagagaaatctgct
gtgtttgtaaaaagaagtgactgtgccctgatgaaagacatgcacaacagaaatgctgat
tctgagatgaactctcaaggtgttcaaagatctcgaagaagagtgcagaaactgccatct
tcagatgaggaatctagtgagagtgaagacttgccatgctttcagacactaatatttggc
aaatcagtaagcacacctttgcaggacaataaacaagtggcatctgtggcagagttttca
gcgagtcccagcaatggaagccatgatgacagtaacgtgcagaaattgcccaaagctgcc
ccaggtaatgggtgcctttcactaagccaggagtcagaatgctccatcaacttgttttct
tcccagtccaacaattctgaagaatcagctgatggagcacaagagccaaagaaactttca
gcacaagccaatggacccaaacaagtgaacaatgagagtgagagtaaggaagtttctcga
agttgcaacggaaggctgaagagaagcaaaacaaacttcaaagatgaatgccaagaagac
ccaaatgtgggagcaaacctaggtacaaaccaagtctcatctggatatgacagtgaaaca
agtaatgtggaagattcatgtggacttctctctcagggtgaaatccttaccacacagcag
aagaatgctatgcaaaataacctgaaaaaacttcaggaagaaatggctgtacttgaagca
gtgctgcagcagcatgggagccaggactctcagtttccacccgtgcacggggaactgcca
cgttccagtagtaaaggaacatttggaatggaacaaaggagtcaagaaagagaaaatgca
gatgagcagaaatctgggaccaggctcaacagtccacctgttgtatcaaatctccttgga
aatgtgactgggagtccaagtaactcaccgtcctctgcaaagctgcttcacccttccatt
gtggcctcaggcctgaagcaaagtgaacgtttggtggtccagaagtttgcaagaaaaact
cggagcactttatctgatcacattactgaaggaaccacccatgtcataatgaaaacagat
aaggagcttgtgtgtgagcggacactgaagtatttcctgggcattgcaggaaggaaatgg
gtcgttagctaccaatgggtgattcagtcttttgaagaaggaaggatactggatgaggag
aactttgaagttagaggagatgtaatcaacgggagaaaccaccaaggtcctaagagggct
agagagtctctaactgagaagatctttaaagactttgagatctgttgctgtggacctttc
actggtatgaccacagaacatctggaatggatggtggagctttgtggtgcctctgttgtg
aagcaacttcatctgttcacacacacaaaaaactccgctattgtggttgtgcagccagat
gcttggacggaaaacacggattacagagccatccagcaaaagaacagcattgccatggtg
actcgagagtgggtgttggacagtgtcgcttgctatgagtgccaggagttggatgcttac
cttgtgtcctga

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