Daphnia pulicaria: 124340488
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Entry
124340488 CDS
T08670
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
dpz
Daphnia pulicaria
Pathway
dpz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124340488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpz03041
]
124340488
Spliceosome [BR:
dpz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124340488
Complex C
U5 SnRNP specific factors
124340488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EFTUD2
GTP_EFTU
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
124340488
NCBI-ProteinID:
XP_046648984
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All DBs
Position
5:complement(6174644..6178688)
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AA seq
983 aa
AA seq
DB search
MDADLYDEFGNYIGPELESDEDENEEGDEADHDDEAEDYGDNDSEEAMDQTVVDGDAQMA
IVLHEDKKYYPSALEVYGPGVETLVQEEDAQPLTEPIIAPVKRRKFQVAEQELPETTYNM
EFLADLMDSAELIRSVALVGHLHHGKTSFMDCLLMQTHPDLQTGKPGSGEEKPVRYTDTL
FTEQERGVSIKATPITVVMPDLNEKSFLLNMFDTPGHVNFSDEVTAALRLCDGIVLFVDA
VEGVMLNTERILKHAVQEKMAITVCINKIDRLILELKLPPQDAYYKLRYIIEEINGLLGL
YSDEENPKFVSPLLGNVCFASAQFSVCFTLKSFAKLYSDTYGSDINDNELARRLWGDIYF
NSKTRKFTKKPPHSSAQRSFIEFILEPLYKIFAQVVGDLDSSLPQLLDELGIRLTVEEQR
LNTRPLLRLVCSRYLGTFSGFVEMCVKHVPSPVTAARTKVEHIYTGPLESILGEDMVNCD
PNGQLVVHTTKQYPTEDCTGFYVLGRVLSGTLHAHQSVRLLGENYSLNDEEDSRVLTIGR
LWIYEARYKIEVNRVTAGSWVLIEGIDASVVKTSTIVQVHVDEDLYICRPLKFNTQSIIK
IAVEPVNPSELPKMLDGLRKVNKSYPLLSTRVEESGEHVILGTGELYLDCVMHDLRKMYS
EIDIKVADPVVSFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVQINW
NKKKLSEFFQSKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVNKSLLNTVKDSIVQG
FQWGTREGPLCEEPIRNAKFKILDAVIADEPVHRGGGQIIPTSRRVAYSAFLMATPRLME
PYLFVEVQAPADCVSAVYSVLARRRGHVTQDAPVPGSPLYIIKAFIPAIDSFGFETDLRT
HTQGQAFCLSVFHHWQIVPGDPLDKSIILRPLEPQPATHLAREFMVKTRRRKGLSEDVSI
NKFFDDPMLLELARQDVTLTYPF
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgatctctacgacgaattcggcaattacattggacccgaactcgagtcggac
gaagacgaaaatgaggaaggagacgaggctgatcacgatgacgaagccgaagactatggt
gacaatgattccgaagaggccatggatcaaacggtggttgatggcgacgcacagatggcc
attgttttgcatgaagacaaaaaatactatccatcagcgttggaggtttacggacctggt
gtggagacactggtgcaggaagaagatgctcagcccttgactgaacccatcatcgcacct
gtcaaacgaagaaagtttcaggttgctgagcaagaactccctgaaaccacatacaacatg
gagtttctggctgatctcatggactctgcagaacttattcgctcagtggcccttgttggt
catttgcaccatggcaagacttccttcatggattgtctgctcatgcaaacacacccagat
ctccagacgggtaaacctggcagtggagaggagaagcctgtcagatacacagacacactc
tttactgaacaagagagaggtgtttccatcaaagcgacgcccattaccgtggtcatgccc
gacctgaacgaaaaatctttcctcctcaacatgttcgacacacctggtcacgtcaacttc
tcagatgaagtcacggctgccctgagactttgcgatggtatcgtcctctttgtcgacgct
gtcgagggtgtcatgctcaacacggaacgaatcttgaagcacgccgtccaggagaaaatg
gccatcacagtttgcatcaacaaaatcgatcgactcattttggagctcaaactgccacct
caggacgcatattacaagttgcgctacatcattgaagagatcaatggtcttttgggcctg
tacagcgacgaagagaatccaaaattcgtctcgcccttgttgggcaacgtctgctttgct
tctgcccagttctccgtttgcttcacccttaaatccttcgccaaactttacagtgacaca
tacggatccgatatcaacgacaacgagttagcacgtcgtctgtggggtgacatttacttc
aacagcaagacgagaaagtttaccaaaaagccgccacatagctcggctcagcgtagtttc
atcgagttcattttagagccgttgtacaaaatctttgcccaggttgtgggagatttggat
tcgagtctaccgcagttgctggacgaacttggcattcgcctgactgtcgaggaacagcgg
ttaaacactcgccccttgttgagactggtctgcagtcgctacctgggcactttcagcggt
ttcgtggaaatgtgcgtcaaacatgtcccgtcgcccgtaacggctgctcgcaccaaagtg
gaacacatttacacaggtcccctggagtccatcctgggcgaagacatggtcaactgtgat
cccaacggccaactggttgtccatactaccaaacagtatcccacagaggactgcactgga
ttctatgtcctgggtcgtgtcctgagtgggacccttcacgctcaccagagcgttcgactc
ctgggtgaaaactattcgctcaacgacgaagaagattcacgtgtgttgacgatcggccga
ctttggatatacgaggcacgttacaagatcgaggtcaatagagtgacggcaggcagttgg
gtcttgatcgaagggattgatgcctcagtggtcaagacgtcgaccatcgtccaggttcac
gtcgacgaggacttgtacatttgccgacccttgaaattcaacacgcaatccatcatcaaa
attgccgttgagccggtgaatcccagcgagttgcccaagatgttggacggtctgcgtaag
gttaacaaatcttacccgttgctctcgacgcgagtggaggagtcgggcgagcacgttatt
cttggaacaggcgaactttacctggactgtgtcatgcacgatctcaggaaaatgtactcc
gaaatcgacattaaagttgctgatcctgtggtgtctttttgcgaaacggtcgtggaaacg
tcctcactgaaatgttttgccgaaactccaaacaaaaagaataaaatcacaatgattgcg
gaacccctggagaaaggtttggccgaagatattgaaaatggagtcgtccaaatcaattgg
aacaagaaaaaattgagcgagtttttccagagcaaatacgattgggatttgttggctgcc
cgatccatttgggcatttggccccgattccacgggacccaacatcctcgttgacgacaca
ctgccgtctgaagtcaataagagtttgctcaacacggtcaaagattccatcgttcaagga
ttccagtggggcacacgagaaggtcccttgtgcgaagaacccatcaggaacgcaaagttc
aagattctagacgccgtcattgccgacgaacccgttcaccgaggaggaggtcaaatcatc
ccaacgtcgcgacgtgtcgcctattcagctttcctgatggctacgcctcgattaatggaa
ccctatctctttgtggaagtccaagcaccggctgactgcgtctctgctgtttacagcgtt
ttggccaggagaagaggtcacgtcactcaagacgcccccgttcccggctcacctctctac
atcatcaaggctttcatacctgcgattgattcctttggcttcgagacagatttacgaacc
cacacccaaggacaggctttctgtctgtccgtctttcatcactggcagatcgttcccggc
gatccgctggacaagagcatcatcttgagaccgttggaaccccaaccggcgacgcatttg
gctcgtgagtttatggtgaaaacgaggcgtcgtaagggtctaagtgaggacgtgtcgatc
aacaaattcttcgacgatcccatgttgctcgaattggccagacaagacgtgacgttgact
tatccgttttga
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