Deinococcus rubellus: N0D28_09015
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Entry
N0D28_09015 CDS
T08504
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
drb
Deinococcus rubellus
Pathway
drb03030
DNA replication
drb03410
Base excision repair
drb03420
Nucleotide excision repair
drb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
drb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N0D28_09015 (ligA)
03410 Base excision repair
N0D28_09015 (ligA)
03420 Nucleotide excision repair
N0D28_09015 (ligA)
03430 Mismatch repair
N0D28_09015 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
drb03032
]
N0D28_09015 (ligA)
03400 DNA repair and recombination proteins [BR:
drb03400
]
N0D28_09015 (ligA)
Enzymes [BR:
drb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N0D28_09015 (ligA)
DNA replication proteins [BR:
drb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N0D28_09015 (ligA)
DNA repair and recombination proteins [BR:
drb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N0D28_09015 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N0D28_09015 (ligA)
MMR (mismatch excision repair)
DNA ligase
N0D28_09015 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N0D28_09015 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
UWX62908
LinkDB
All DBs
Position
1739035..1741143
Genome browser
AA seq
702 aa
AA seq
DB search
MSADQRTPNQDSAQGVTAQSRAEQDAGSLARQRYDWLIGELARHNRLYHEQDAPEITDHE
YDALAREARALEAEHPDWPVGAVAVSPVQAVGGAPSSAFLPVNHPTPMTSLDNVFGDDEL
RGFQEKLARSLNIAPGEADFTYTCELKIDGLSVNLYYLDGELQWAATRGNGVMGEIVTAQ
VLTIAGLPQKLEGLKGELEVRGEVYLSREEFAAFNERAEELGTPPLKNPRNGAAGALRQK
DPELTRSRNLSAILYALGKRDGVAARTQWEVLDWLRVRGFPVSPYSKQVRGVEEAVQYHA
DLLAMRGGLPFDVDGTVIKLDDLNLQTEAGFTSRAPKWAIAYKFPVEEAQTTLESISINV
GRTGKLAPLAHLASRLIEGSTVSKATLHNEDFIRDLDLHVGDTVVVRKAGGVIPELVRVL
PELRPEGAEPYTFPDHCPICAFPAVREEGDANRYCTNPVCPARLYEGLRYFVSRGALDIR
GIGEKLTRQLLEAGLVKDAADFYQLTAEQLANLERGGDKKAANILAQLEESKAKPLWRLI
NALGMAGVGDRNAKALARAFGSLAALEAATPEQIEAVPGLGGILAHSVSAELASERLQSL
IAKLRAASLGSQISEAESRTAQLANLNFVLTGSLSRPRDVLKAALEARGARVTGSVTGKT
SYLVAGEDAGSKLTRAQELGLPVLDEAALTALLSELGAPLLD
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctgaccaacgaacaccaaatcaggattcagctcagggcgtaacggcccagagc
agagcggagcaggacgcaggcagcttagcccggcaacgttacgactggctgatcggagaa
ctcgcgcgccacaaccgcctctatcacgagcaggacgcccccgagatcaccgaccacgaa
tacgacgccctggcccgtgaagcccgggcgctggaagctgagcatcccgactggcctgtg
ggggcggtggccgtctcgcccgtgcaggcggtgggcggcgcgcccagcagcgctttcctg
ccggtcaaccaccccaccccgatgaccagcctcgacaacgtcttcggcgacgatgaactg
cggggctttcaggagaagctggcgcggtcgctgaacatcgcgccgggcgaggccgacttt
acctatacctgcgaactcaagatcgacggcctgagtgtcaatctgtactacctggacggc
gaattgcagtgggccgccacgcgcggcaatggagtgatgggcgagatcgtgaccgcgcag
gtgctgaccatcgccgggctgccgcagaagctggaaggactgaagggtgaactcgaagtg
cgcggcgaggtgtacctcagccgcgaggagttcgccgccttcaacgagcgggctgaggaa
ctgggaacgccgccgctgaaaaatccccgcaacggagctgccggagcgctgcgccagaaa
gacccggaactgacccgctcgcgcaacctcagcgccattctgtatgcgctgggtaagcgg
gacggcgtggcggcgcgtacccagtgggaggtactcgactggctgcgcgtgcggggattt
ccggtcagcccgtactcgaagcaggttcggggcgtagaggaagctgtgcagtaccacgcc
gacctgctcgccatgcgcggcgggttgcccttcgatgtggacggcaccgtcatcaagctc
gacgacctgaacttgcagaccgaggccgggttcaccagccgcgcgcccaagtgggcgatt
gcctataagtttccggtggaggaggcccagaccacgctggaaagcatcagcatcaatgtg
gggcgcaccggcaaactggccccgctggcgcacctcgcgtcccggctgatcgagggcagc
actgtcagcaaggccacgctgcacaacgaggacttcatccgcgacctggacttgcatgtg
ggcgacacggtggtcgttcgcaaggccggaggggtcattcccgaactggtgcgggtgttg
cccgaactgcgcccggagggggccgaaccctacacctttcccgaccactgccccatctgc
gcttttcccgctgtgcgggaggagggtgacgccaaccgttactgcaccaatccggtatgc
ccggccaggctctacgaggggctgcgctacttcgtctcgcgcggcgcgctggacattcgc
ggcatcggcgaaaagctgacccggcaactgctggaagccggactggtcaaggacgccgcc
gacttctaccagctcactgccgagcaactcgccaatctggagcgcggcggcgacaagaaa
gccgccaatatcctggcgcaattggaggaaagcaaagccaagccgctgtggcgactgatc
aacgcgctgggtatggcgggcgtcggggaccgcaacgccaaagcgctggcccgcgccttc
gggtcgctggcggcgctggaggcggccacacccgagcagatcgaggcggtgccgggactg
ggcggcatcctggcccacagtgtcagcgccgaactcgcctccgagcggttgcaaagcctg
atcgccaagctgcgggccgccagtctgggcagccaaatcagcgaggccgagagccgtacg
gcacaactcgcaaacctcaatttcgtgctgaccggcagtctgtcgcggccccgagacgtt
ctcaaagcggccctggaagcgcggggcgcgcgcgtcaccggtagtgtgaccggcaagacc
agttacctggtggcgggcgaggacgccgggagcaagctgacccgcgcccaggaactcggg
ctgccggtgctggacgaggcggctctcacggcgctgctctcggagctgggcgcgccgctg
ctagactga
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