Danio rerio (zebrafish): 100002370
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Entry
100002370 CDS
T01004
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
100002370 (zc3h12b)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
100002370 (zc3h12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
KH_N4BP1_1st
TNFR_ELAPOR1_6th
UBA_N4BP1_C
zf-CCCH_4
zf-CCCH_2
Omega-toxin
Motif
Other DBs
NCBI-GeneID:
100002370
NCBI-ProteinID:
XP_005165265
ZFIN:
ZDB-GENE-060526-290
Ensembl:
ENSDARG00000062463
UniProt:
A0A8M2BCG1
LinkDB
All DBs
Position
5:22085362..22109048
Genome browser
AA seq
1017 aa
AA seq
DB search
MVLELAAPAGAGPALQRCIPHIQRVFRVRVSCSAAESSCDSPNAGSSIIVNIEDGKEEDC
TKAKEYIVSLISPVHKHRERLTLWLQRRLHALRAAIEYESCAVVQVRDHALELQGGHAQV
TAACAMLQRLKMEHRGCRDPQPSPAAAGHESPEEEEEEEDEEAGEEGSSSESEGEVRPRS
GSSGGVSSAGSGDCPVGRRRDLLIAAKPHRQLCRSSCLDRPSFSQSSTLQELRADDTCTD
PSQKALAPPSSASPMSLRQTSDRDYQTKMDFALKLGYSGEQVESVLSKLGANALINDVLA
ELVRLGNKGDPESQTAAGSASFAPRTVGAKEAVSPEASLEEDSSDTYDNLRPIVIDGSNV
AMSHGNKEVFSCLGIQLAVDWFLEKGHKDITVFVPAWRKEQSRPDAPIKDQEILRKLEKE
KILVFTPSRRVQGRRVVCYDDRFIVKLACDSDGIIVSNDNYRDLQNEKPEWKKFIEERLL
MYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVVPEHKKQPCPYGQYSKSKKCTYGHKCKY
YHPERANQPQRAVADELRAFAKLSAVKTMSEGALAKCGTSGAANKGESGSEAKRVAPKRQ
SDPSIRSVACEQEERLCPMRKAEASSVPSLVSALSVPTMPLTKSHAAGALNTRSASSPVP
GSLHFTHSSLEHAGSVQYPPILVTNSQGASVAYGEPFPKYDSVVSDHGYYSMLSDFSTIS
LQDSFCSLEQPEPVGVGGGYSGRAPSMCPEPGRSHSSDSFSSYSGELYLNSLEGSLDDSM
KSAPTQPSAQTRLQAFAHGFHHEALTRVQSYGTDEPKPGPRKQTSAHLAPHTQHPVVGAR
SSCPGDYPPLPQNVLPSVSPSQPGRSLGMTRMDSISDSRLYESNPLRQRRPPLCREQHAS
WDPLPCGNEPYSYGGYGLTGALMPCCERVMVRSMPEKMEQIWRSPWDSVPPPPPATRGPA
GDHQERHPIPEHQYQTYRNLCNIFPAYVVHSVMEKNPHMTDPQQLAAVIVTELRSCH
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctcgccgcgcccgccggtgcaggccctgcgctccagcgctgcatcccg
cacatccagcgggttttccgggtcagagtgagctgcagcgccgccgagtccagctgcgac
agccccaacgccggttccagtatcatcgtaaacatcgaggacggcaaggaggaagattgc
actaaagctaaagagtacattgtgtcgctaattagtcctgtgcataagcaccgtgagcgg
ttgactctgtggctgcagcggcgactgcatgccctacgtgcagcaattgagtacgaaagc
tgcgccgtggtgcaggtgagggaccatgcactggagcttcagggaggtcatgcacaggta
acagctgcatgcgctatgctgcagcgcctgaagatggagcaccgcggctgccgcgacccc
cagccctcacccgcagccgccggtcacgagtctccagaagaagaggaggaggaagaggat
gaagaagctggcgaagaaggaagtagttcagagagcgaaggagaggtgcggccgcgcagt
ggaagttctggaggtgtcagttcagcggggtcaggagactgtccagtaggaaggagacgg
gacctgctcatagcagccaaacctcaccggcagctgtgccgctcgtcctgtttggaccgt
cccagcttcagccagagcagcaccttacaagagttacgagcagatgacacctgcaccgac
ccgtcccagaaagcccttgctcctccctcctccgcatccccaatgtccttacgtcaaacc
agcgatcgagattatcaaaccaaaatggactttgctttgaagctgggctactctggagaa
caggtggagtctgtgctgagtaaactgggggccaatgcgctaatcaatgatgtattggct
gagctggtgcggttaggaaataaaggagatccagagagtcagacagcagcgggtagtgcc
agttttgcaccacggacagtgggagccaaagaagccgtaagcccagaggcatcgctggag
gaagactcatcagacacgtatgacaacctccgaccaatcgtgattgacggatccaatgtt
gccatgagccatggaaacaaagaggtgttctcatgcctgggcattcagctggctgttgat
tggtttctggagaagggccacaaagacatcacagttttcgtcccagcatggaggaaagaa
cagtcaagacctgatgcaccaatcaaagatcaagagatcctccgaaaattagagaaggaa
aagatcctcgtcttcacaccgtcccgcagagttcaaggccggcgagtggtttgctatgat
gaccgttttatcgtcaagctagcctgtgactcggacgggatcattgtgtctaatgacaac
tacagagacctgcagaacgagaaaccggagtggaagaagtttattgaggagcgactcctc
atgtacagcttcgtcaacgacaagtttatgcctcctgacgatcctttgggcagacatgga
cccagtctggaaaactttctccgcaaacgtccagtggttccagaacacaagaagcagccg
tgtccttatggtcagtacagcaaaagtaagaagtgcacgtatggccataagtgcaagtac
taccacccagaaagagccaaccaaccacaacgggctgttgcagatgagcttagagctttt
gctaaactctctgctgtaaaaaccatgagtgagggggcacttgcaaaatgtggaacctct
ggggctgctaacaagggagaaagtggctcagaggcaaagcgagtggcacccaagcgccag
tctgaccccagtatccggtcggttgcatgtgagcaggaagagagactctgtccaatgcgg
aaggcagaggccagttctgtaccgtctttagtgtccgctcttagcgtccccactatgcca
ctaacaaagagtcatgcagctggcgctttgaacacacgatcggctagcagccctgttcca
gggtctctgcactttacccacagctcgctggagcacgcgggcagtgtccagtatccccca
atcctagtcaccaatagccagggtgcatctgtggcatatggtgagccgtttcccaagtac
gactcagtagtgagtgaccatggctactactccatgctcagtgacttctccaccattagc
ctccaagacagtttctgcagtctcgagcagccagagcctgtaggagtgggtggaggatat
tctggcagagctcccagcatgtgcccagaacccggccgaagccattcatctgactctttt
tcgtcctacagtggagaattgtacctcaactcattggagggcagtctggacgacagcatg
aaatctgcgccaacgcaaccttcggcacaaacacgccttcaagcctttgctcacggtttc
caccatgaggccttgacacgtgtgcagagctatggtacggatgagcccaaaccgggacct
cggaagcaaacctccgcccacctcgcacctcacacccaacacccggttgttggtgctcga
tccagctgcccaggagactaccctcctctcccccagaacgtgttgccttctgtcagcccc
tcacagccgggccgatccttaggcatgacccgcatggacagcatctctgattctcggctc
tacgagagcaaccctctgcgccaacgccgaccgccgctttgccgagagcagcatgccagc
tgggaccctttgccatgtggcaatgaaccctacagttatggaggctatggattaaccgga
gccctcatgccttgctgtgagagggtgatggtccgcagcatgcccgagaagatggagcag
atctggaggtccccgtgggatagtgtgccgcctccaccccctgccactcgtgggccagca
ggggatcaccaagagcggcaccctattccagaacaccaatatcaaacctaccgaaacctc
tgtaacatcttcccggcatatgtggtccattcggtcatggagaagaaccctcacatgacc
gatccccagcagctggctgccgtcatcgtcactgaactgcgctcttgccactaa
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