Danio rerio (zebrafish): 100005273
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Entry
100005273 CDS
T01004
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100005273 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dre04131
]
100005273 (scarf1)
Membrane trafficking [BR:
dre04131
]
Endocytosis
Phagocytosis
Scavenger receptors
100005273 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
100005273
NCBI-ProteinID:
XP_001344375
ZFIN:
ZDB-GENE-030131-8778
Ensembl:
ENSDARG00000077285
UniProt:
E7FBT2
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Position
15:complement(30715661..30729985)
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AA seq
888 aa
AA seq
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MDTFLTSFGLMLMCVQYSAQRLSLTGKNVCLSVRDSSAICCSGWGQSGDECTVPLCEGER
ACLQDEVCVYPGLCRCKAGFYGYQCKAPCPPEFWGPDCREFCPCHPHGLCDPATGVCSCL
PNRWGSLCQNSCKCGRHGKCDPVYGNCTCEEGWWTSTCSKACQCHLATSTCDQATGRCIC
NEGYWGQKCSLPCNCYVSPCQQRTGTCQCLHGWWGPSCDRRCICNLNNADCDVQTGGCLC
YPGYKEPFCNEPCDSGKYGRGCKNSCGRCEGGRPCSKLDGLCDACEPGWNGTRCDQRCPA
GYYGHRCQEICPHCRNMDPCDPETGACLQCNPGWTGPRCDKPCTDGRYGDGCRFLCKTCN
HGHCDHVTGRCICLPGFQGESCNSTCPFNLYGFNCSSTCDCGSQACHPATGACPNSSRAG
LLAGLLIPLCILILALLFCCCCCGRPVEGKERVTVGDGSPAVRMKHHVYTVLANMGSAMP
CITLWSSGLPRVTVSHHDPELTFNHSFIEQPSSGWVIDSFETDEDGEAVYCEPPREDVLT
EAGGELQELNSKCNFFPDPSTFSSEDMSQAFGIPRTSSIAKSKRPSVSFAEGTKFSPKER
RSSTQDLQGTARKPKPWGVLMISALQGGQGNQNNETETEKEEKNDEENISEEQRASSETL
QNDSERYSSGPQRTHLTVPGGRRRTLSNPKKNIQSSDGGQDADSEKLTTVYVTVGKTSKM
VKQEPPSEGPVQAMLRRLGSLQRQKEEVAKGKAQSIVKPPRRKLGARASAWEQASGSGQS
EVVMRKPSRKKHSSLSSPCIVGAIDSPQENSAPKRPLSSILKSVPESDPFQSLEVEPNSE
ETGIQTEHTYETVALPDTVSTSSEIIINDTVMDQAENEPNYENVYLKH
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggacacctttctgacctcatttggactgatgctcatgtgtgtccagtactcagctcag
agactctctctgaccgggaagaacgtctgcctcagtgtcagggattcctctgcaatatgt
tgttctggatggggccagagcggtgatgaatgcactgtccctctctgtgagggagaaaga
gcctgtctgcaggatgaagtgtgtgtttaccctggactctgtcgatgtaaagctggattt
tacgggtaccagtgcaaagctccttgtcctcctgagttttggggaccagactgtcgcgag
ttctgtccctgccaccctcacggactctgtgatccagccactggcgtatgctcatgcctg
cccaaccgctggggcagcttgtgccagaacagctgcaaatgtggccgccatggcaaatgt
gaccctgtctatgggaactgcacctgtgaggagggctggtggacatccacttgctccaaa
gcatgtcagtgccacctcgctacctccacctgtgaccaagccacaggccgctgcatttgc
aatgagggctattggggccaaaagtgcagcctgccatgcaactgctatgtgtccccttgt
cagcagcgcactgggacatgccagtgcctgcatggctggtggggcccgtcctgtgaccgc
cgctgcatttgcaatctcaacaatgctgactgtgatgtgcaaactggtggctgtttgtgc
tacccaggttacaaagagcctttctgcaatgagccttgtgacagtggaaaatatggccga
ggctgtaagaacagctgtggacgttgtgaaggaggcaggccttgctctaagctggacggc
ctgtgtgatgcctgtgaaccaggatggaatggcactcgctgtgatcaacgctgtcctgcg
ggttattatggccatcgctgccaagaaatttgtccgcattgtcgaaacatggacccatgt
gacccggaaactggtgcatgtttgcagtgtaatcctggctggactggaccaagatgtgac
aaaccctgcacagatggtagatacggagatggctgtcgcttcctctgtaaaacttgcaat
catggccactgcgaccatgtgacaggaagatgcatttgtcttcctggctttcagggtgag
agctgtaacagcacatgtccttttaatctttatggcttcaactgctcctccacatgtgat
tgtggaagtcaagcctgccatccagccactggggcttgtccaaacagtagcagagctggt
cttttagcagggcttttgattcctctctgcatattaatactcgccttgttgttctgctgc
tgctgttgtgggaggccagtcgaaggaaaggaaagggtcacagttggagatggcagtcct
gcagtccgcatgaagcaccatgtttatactgtgttggccaacatgggttcagcaatgcct
tgcatcactctttggtcatctggtttgcccagggttactgtctcgcatcatgatcctgag
ctcacatttaaccacagcttcatcgagcagccatcatccggctgggtaatagattcattc
gaaactgatgaggatggagaagctgtttactgcgaaccacccagggaagatgttcttaca
gaggccggcggagagcttcaggagctgaattccaagtgtaacttcttccctgacccatca
accttcagcagcgaggacatgtcacaagcttttggcatcccccgtacctccagcatcgcc
aaatccaaacgcccttcagtgtcattcgcagagggtacaaagttcagcccaaaagagcgt
cgcagttcaactcaagatctgcaagggaccgctcgaaaacccaaaccctggggtgtcctg
atgatctccgccctgcaaggaggacagggaaaccagaataacgaaacggaaacagagaaa
gaagaaaaaaacgatgaggagaacatctctgaggagcaaagagcttcctctgaaacacta
caaaatgattcggaaagatatagttcgggcccacagagaactcacctcactgtacccggt
ggaagacgacgcactctttctaaccccaaaaagaacatccagtcatctgacggcggacag
gacgcagattcagagaagttaacaacagtatacgttactgtaggtaagacctccaaaatg
gtcaagcaagagcctccttcagaagggcctgttcaggcgatgctgcgcagactaggaagc
ctccagaggcaaaaagaagaagttgctaaaggcaaggcccaatcgattgttaagcctcca
cggaggaaactaggtgcccgagccagtgcatgggagcaagcgagcgggtcaggccaatca
gaagtggtcatgaggaaacccagtcgtaaaaaacacagctctctcagctctccatgcata
gtcggggcaatagactctcctcaagagaacagcgcccccaagaggccgctgtcctccatt
ttaaaaagtgttcctgagagtgatccatttcaaagtttagaggtggaaccgaacagtgag
gagactggcatacagactgagcacacttatgagactgtggctctgcctgacactgtgtcc
acctcttcagagattattattaatgacacagttatggaccaagcagaaaatgagcccaat
tatgagaatgtttatttaaagcattga
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