Danio rerio (zebrafish): 100006496 Help Entry 100006496         CDS       T01004                                  Symbol pcdh1a Name (RefSeq) protocadherin-1   KO K16498   protocadherin delta 1 Organism dre  Danio rerio (zebrafish) Pathway dre03273   Virion - Lassa virus and SFTS virus Brite KEGG Orthology (KO) [BR:dre00001]  09120 Genetic Information Processing   09125 Information processing in viruses    03273 Virion - Lassa virus and SFTS virus     100006496 (pcdh1a)  09180 Brite Hierarchies   09181 Protein families: metabolism    01009 Protein phosphatases and associated proteins [BR:dre01009]     100006496 (pcdh1a)   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:dre04515]     100006496 (pcdh1a) Protein phosphatases and associated proteins [BR:dre01009]  Protein serine/threonine phosphatases   Phosphoprotein phosphatases (PPPs)    Protein phosphatase-1     PP1-interacting proteins (PIPs)      100006496 (pcdh1a) Cell adhesion molecules [BR:dre04515]  Cadherins   Protocadherins    100006496 (pcdh1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Protocadherin Cadherin_2 Cadherin_CELSR2_9th PepSY Fibulin_C PDGLE Motif Other DBs NCBI-GeneID:  100006496 NCBI-ProteinID:  XP_001345220 ZFIN:  ZDB-GENE-091116-32 Ensembl:  ENSDARG00000062720 UniProt:  F6NJQ3 A0A8M1PVC3 LinkDB All DBs Position 10:complement(20917159..21054035) Genome browser AA seq 1190 aa AA seqDB search MDLPVVLFLLWGLLLDLLTGAVGGILYRVHEEQPPSTLIGSLAADQGLPDTGHLYKLEVG APYLRVDGKTGDIFTTEIPIDRETLKDCRNKGKPCFLEFEVSVTDLIQNQSPRLIEGRIE VQDINDNTPQFPSPVLTLSVPENTHMGALFSIPLATDKDTERNGVADYTLTAGPEAVALF GLQVAEDRGEKLPQLIVLGSLDRELKDSYDLTIKAVDGGNPPRYSSALLRVVIADANDNA PKFEKSSYEAEVAENSPIGHSVLQVKANDSDLGPNGEIEYTLHQAIDPVPKLLRIDRSSG IIYVKGPLDREEINNLKFYVVARDKGPSPKSSKTYVSIDVTDQNDNAPAVEIRGIGLVTH SDGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPASDSSVDNKRKYF LQTTTPLDYERVRDYRVEIVAVDSGNPALSSTNSLKVQVTDTNDNSPIFSPTLFEVEFAE ENQPGEKVVEVVASDADSGTNAELVYSIIADSSTRGLFEIDPNSGEVRARSPFDREHKDR YEFRVTAADKGVPSHRGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTVQ DMDEGENAQVQLSVEPDVGKFVIQNGTGTILSSISFDREKESSYTFRLKAVDGGDPPRSS YVGVTINVLDENDNAPVVTKPSNSSFIRLSPMAAPDSVVEVVEAEDIDSGSNAELVYSIA GGNPHDLFYISPSNGEITLTKELTRKHSGLHRLVIKVSDRGKPSRHAIALVHIYVNETIA NVSHVEALVGHSLYTPLDMDIAGDPDYGLAAQRSNIVYGSLAGVAGVVTVIVVVVFIRHR LQRETKSGYQAGKKETKDLYAPKQGPKSGKGRKGKKGKPPKSPKPLGEDEEVSLQKSLKF NLDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQAVQELPAAN TFVGTGGDDNSTGSDQYSDYSYKTNQPKYSTKTLPHRRVTFSTANPMQDQQDSSQQSYYD SGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPETDIRSLPDVAMTGNC SQECSELGHSDACWMPGQPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSVRLGGDENRP RLPPSRSAYSSSEHAPSDHAPLEEVPLSVTSEFPPTSPPSNHASKREIYL NT seq 3573 nt NT seq  +upstreamnt  +downstreamnt atggatctccctgtggttttgtttctgctgtggggactgttactggacttgctgactggt gcggttggtggcattctataccgcgttcatgaagaacagcctccgagcacactgattggc agcctggcagcagaccaaggcctaccagacactggacacctgtacaaactggaggtgggc gctccctatctgcgggtggatggcaaaactggagatatctttaccaccgagatccccata gacagagagacactgaaggattgtcgtaataaaggcaaaccctgctttctggagtttgag gtgtccgtcacagaccttattcaaaatcagagtccacggctgatagagggaaggatcgaa gtacaggatatcaacgataacacaccacagttcccctcacctgtccttactctctcagtt ccagagaacacccacatgggggcactcttctcaattccactggccactgataaagataca gagaggaatggagtagctgactacaccttaacagcaggaccagaggctgtagcactcttt ggtctgcaagttgcagaggatcgaggtgaaaaattacctcaactcatagtgttgggaagc cttgatcgagagctgaaagactcatacgacctcaccatcaaagctgtggatggaggaaat ccacctcgctatagcagtgccttgctgagggttgtcatagctgatgccaacgacaatgca ccaaaatttgaaaaatcctcctatgaagcagaggttgcagagaacagcccgattggacac tctgtgttacaggtaaaggctaatgattcagacttgggacctaatggtgaaattgaatac acattacatcaggccattgatcctgtgccaaaactgcttcggatagatcgctcatcaggc atcatatatgtcaaaggacctttggatcgtgaggagatcaacaatttgaagttttacgta gttgcacgagataaaggcccttcaccaaaaagttctaaaacttacgtttctattgatgtg acagaccagaatgacaatgcaccagcagtggagattcgaggaattggtcttgtgacccac agtgatggtgtagcaaatatttcagaggatatgccggttggaactgcagtggcactggtg caagtttcagacaaggacgagggagagaatgcagtggtgacctgtgtggttgcaggggat gttccttttcagcttcgaccagctagtgattcatcagttgacaacaagagaaagtacttt ctacagaccacaacacctctggactatgaaagagttagggactaccgagtggaaatagta gcagtggattcaggcaatccagctctatccagcaccaactctctgaaagtccaggtgact gacacaaatgacaattcccctattttctcacccaccctgtttgaagtagagtttgctgag gaaaaccaaccaggagaaaaggtggtagaggtagttgcctcagatgcagacagtggaact aatgcagagctggtctacagcattattgcagactcttcaacaaggggcctttttgaaatt gaccccaactcaggagaagtacgtgctcggagccctttcgatcgtgagcacaaggaccgc tatgagttccgtgttactgcagctgacaaaggggttcccagtcacagaggtactgccaca gttgtaatcaaagtacttgatcggaatgataatgaccccaagttcatgctgagtggctac agcttttcagtcttggagaatatgccaccccttagccctgttggcatggtaacagtacag gacatggatgaaggtgagaatgctcaagtgcaactttctgtggaaccggatgtgggcaaa tttgtgattcagaatggtactggcactattctgtccagcatctcatttgacagagagaag gagagcagttacacattcaggttgaaagctgtagatggaggagaccctcccaggtcatct tacgttggagtgaccatcaatgtcctggatgaaaatgacaatgcaccagttgtaaccaaa ccatcgaactcatcctttatacgtctgtctcccatggctgctccagacagtgttgttgaa gttgttgaagcagaggacattgattctggttccaatgctgaactagtttacagtattgct ggaggaaatccacatgaccttttttacatctcaccatctaatggtgagatcacattaacc aaggaattaacacgcaaacatagtggtctgcatcgactggtcataaaagtcagtgacagg ggcaaaccatcccgccacgccattgccctggtacacatttatgttaatgaaactattgct aatgtaagtcatgtggaggcacttgtggggcatagtttgtacaccccactcgacatggac attgcaggagacccagattatggtttggctgcccaaagaagtaacattgtgtatggcagt ttagctggagtggcaggagtcgtcaccgtgatcgttgttgtggtcttcatcagacatcgc cttcaaagagaaactaagagtggttatcaggctggcaagaaggagaccaaagatctgtat gcccccaagcaagggccaaaaagtggcaaggggagaaaaggtaaaaaagggaagccacca aagtcacctaaacctcttggagaggatgaagaagtcagccttcaaaagagtctgaaattt aaccttgatggggttaatgacagccccaggatccatttgcctctgacatatccgcctgga agccctgacctgggcaggcattatcgttccaattccccattgccctccatccagctccag gcccagtccccatctgcctcccaaaagcatcaggctgtccaggagctccctgctgccaat acctttgtgggaacaggcggggatgacaactccaccggctcagaccagtactcggattac agctacaagaccaatcaaccaaaatacagcacaaaaacgctcccgcatcgcagagtgacg ttctccacagccaacccgatgcaagatcagcaggactcgtctcagcagagttactatgac agtggcttggaggagtctgagacccccagcagcaagagttcttcaggaccacgtattggg cccctcgctctacctgaggaccactacgaaaggaccacccccgatggcagcatcggagag atggaacaccctgaaaccgatattcgttcgttgcctgatgttgccatgacggggaactgc agtcaggagtgcagcgagctgggtcactcagacgcttgttggatgcccggtcagccttcg cctgttcgcaagacccgcaacccccctaaactgtccacgtttgtgccttatcaggagagg gggagcctgggacgcctggccaatgggagtgtgaggctgggaggagatgagaacaggcca cgcctcccaccttcccgtagtgcctactccagtagtgagcacgcccccagtgaccacgcc ccactggaggaggtgcctctgagtgtgacatcagagttcccgcctaccagccccccctcc aatcacgcctcgaaaagagagatttacctgtga

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