Danio rerio (zebrafish): 100007362
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Entry
100007362 CDS
T01004
Symbol
pcdh20
Name
(RefSeq) protocadherin-20 precursor
KO
K16498
protocadherin delta 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100007362 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dre01009
]
100007362 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
dre04515
]
100007362 (pcdh20)
Protein phosphatases and associated proteins [BR:
dre01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100007362 (pcdh20)
Cell adhesion molecules [BR:
dre04515
]
Cadherins
Protocadherins
100007362 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
FAM176
CD34_antigen
Calci_bind_CcbP
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
100007362
NCBI-ProteinID:
NP_001338646
ZFIN:
ZDB-GENE-240926-1
Ensembl:
ENSDARG00000036424
UniProt:
E7F9B5
LinkDB
All DBs
Position
11:complement(45279225..45283407)
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AA seq
881 aa
AA seq
DB search
MWNTKRRICLHSTGELWGLFILLLYSIPFSCSSNFSHLIYKIKEGLPKGTLIGAISADLT
LDLSVNPSRSFSLEQMTTSEHYVNLNSTTGELFTSAIEIDRESLCAESHEGQGCAIFLDV
LILPQQYFQLVKIKIIIEDINDNSPHFPMDEIRLSVPENAPVNARFAVEQSAVDPDIGIH
SVQTYWLNNDYGVFTLDVEENEGGELTPFLILTESLDREARAEYVTEIIAEDGGSPPRFG
NATLRIIISDVNDNCPKFRESQVKVTLYGNATKGMQLARLQAYDPDEGANALITYTFSER
VSQESKSLFHLDTTTGVLKLAGKINNNSAKLYKINILANGAGCIPDVAMVSVHVIKQLSG
PPTVVPRYIAFEKDGVVSLSESEPPFSPIAFFTIKNTEAQQKLECFLESAGPFRIVPYQG
LKNEYLLETTDVLDYELQQDYEIVIVVRNSHGLAVNTVVKVHVLDVNDNAPVFKQSFVEI
AVEENNPPNTFLAQLQASDADSESRGQVYYQLGADAPTIFNIDSYTGVLTVSTSLDREEK
ETYRFMVRALDRGTPKKESIATVIITVQDRNDNSPRFINKDFTFFVPENFPGFGEIGVLT
VTDADAGENGWVALSILNGSDIFVIDTGRGALRAKTPLDREQQGTYYVWIEAIDGGEPAL
SCVTMVTVLLLDVNDNPPTVLFPQSNQSFMLVLPSTVPGTSITEVYAVDRDTGMNAVIAY
SIIKRTDGEPGSFDIDPYTGNITLRKALNSRGLYSLWVKVRDHGQPELYSTVLVNLFVNE
TVSNETLIQSLLPRVVDLDHGEAPPVKEGREGERVPNMCNEYKVILLALTATCMGLFLTV
VSLVTYICCKKRKTKKKRQGTETLKLNHEMVEKNLLEISNI
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacactaaacgacgaatatgccttcacagcacaggagagttatggggtttgttc
attctcctcttgtacagcattcccttctcctgctcttcaaatttcagtcacctcatctat
aagataaaggaaggattaccaaaaggaacacttataggggctatcagtgcggacttaacc
ctggatctttccgtcaatccttctcgctcattcagcctggagcaaatgactaccagcgag
cactacatgaatctgaatagcaccaccggggagctgttcacatctgcgatagagattgac
agagagtctctatgtgctgaatcccacgagggacagggctgtgcaatcttcctggacgtg
ctaatccttccccagcagtactttcagctggttaagattaaaatcatcatagaggacatc
aacgacaacagtccgcatttccccatggatgaaatccggctgtctgtgccagaaaacgca
cctgttaatgcacggtttgcggtggagcagtccgcagtggatccagacatcgggattcac
agcgttcagacctactggcttaataatgactatggagttttcacgctggacgtagaggag
aacgaaggaggagaattgacgccgtttctcatcctaaccgagtctcttgatagagaggcg
cgggctgagtatgtgactgaaattatagcagaggatggagggtctccgcctcgttttggc
aatgcaactttgaggattatcatcagcgacgttaatgacaactgccccaagtttagagag
tctcaagtgaaagtgactctgtatggaaatgccactaaaggcatgcaactggctcgtcta
caagcttatgatccagatgagggagcgaacgccttgattacgtatacgttcagtgaacgg
gtcagccaggaaagcaaaagcttatttcacttggatacaacgactggagttctgaaacta
gcaggaagaatcaacaacaacagtgcgaagctatacaagataaacatactagccaatggg
gcggggtgtattcctgacgttgctatggttagcgtgcatgtcatcaaacaactctctggt
cctccgacggttgtaccgcgttacattgcgtttgagaaagatggcgtcgtgagcttaagc
gaatcagagcctccgttttcccccattgctttttttaccatcaaaaacaccgaggcccaa
cagaaggtggagtgttttctggaaagtgcaggtccttttaggattgtgccttatcagggt
ttaaaaaacgagtacttgctggaaaccactgatgtcctggattatgagctgcaacaggat
tatgaaatagtcattgtggtgcgtaattcccacggattagcagttaacactgtggtgaaa
gtccatgtgttggatgtcaacgacaacgctccggttttcaagcagtccttcgttgaaatc
gccgttgaggaaaataacccaccgaatacgttcctggctcagcttcaggcgagcgatgcg
gatagtgaaagcagagggcaggtgtattatcaacttggagctgacgctcccaccattttt
aacatcgatagctacaccggagtgctaacagtgtcaacatctctcgaccgagaggaaaag
gagacctaccgcttcatggttcgagctttagacaggggaacgccaaaaaaggagtcaatc
gcgacggtgatcatcaccgtccaagatcgcaatgacaacagcccgcgattcatcaacaaa
gacttcactttctttgtaccagagaactttccaggatttggcgaaatcggcgtgcttaca
gtcacagatgctgacgccggagaaaacggctgggtcgctctatcaatcctcaacggaagt
gacatctttgttattgacaccggacgaggagctctaagagccaaaacaccattggatcga
gagcaacaggggacgtattacgtatggatcgaagctattgatggaggagagcctgcgctt
tcttgtgtcacaatggtgaccgttctccttctagacgtcaatgataatcctccaacagtt
ctctttccgcaatccaaccagtccttcatgctggtgcttcctagcacagttccgggaaca
tctataactgaagtgtacgctgtggatcgggacacgggaatgaatgctgttattgcttac
agcattattaagagaactgacggagaaccagggtcgtttgacatcgatccgtacactgga
aacatcaccctgaggaaagccttgaacaatcgggggctttatagtttatgggttaaagtt
cgagatcacggtcaacctgagctctactccaccgtgctggttaacctgtttgtgaatgaa
acggtcagcaatgagacgctcattcagagtttgttgccgagagttgtggatctggatcac
ggtgaagctcctccggttaaggaagggagagagggagaacgagtgccaaatatgtgcaac
gagtataaagtcatactgcttgcattgacggcgacttgcatgggactgtttttgactgtc
gtgtcgttggtgacgtacatttgctgcaagaaaagaaagacgaaaaagaagaggcaaggc
acggagactctcaagctcaaccatgagatggtggagaaaaacctactggagatttcaaac
atttga
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