Danio rerio (zebrafish): 100009659
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Entry
100009659 CDS
T01004
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100009659 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
100009659 (patl1)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100009659 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
100009659 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
100009659
NCBI-ProteinID:
NP_001076497
ZFIN:
ZDB-GENE-070209-83
Ensembl:
ENSDARG00000017423
UniProt:
A2RRV3
LinkDB
All DBs
Position
1:complement(56123697..56149725)
Genome browser
AA seq
765 aa
AA seq
DB search
MFRFQSLDDDCTLEEEEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHTRLAELDERVRDV
LPGAGDSDTSHGGSNAHSSVLPPPSSSSRLYPDIDERGGGDLAESLTRLILGSDPAIAGV
GSTSSDRSHLPPMLSAHPPHPSALAGPSSLLRSYQQHQQFLHRGPAPLSQINSHSIWENS
MGFSPVSVNSGLIGQKEDKTLLSIIKEVGLPNRPPSLSRDEGRDLSERVPPPRSSSPVIG
SPPVRAVPIGTPPKQPMSQILNQQNNHPSAIHVRASVPMRFPPPFPERLSPNNLLSIAKS
PLSHSPFPAGVNPVLSQIQRAQLLNSQVGQFQRGPAPPLLQGGVGGFRPFFGQSGPRIGP
HGPPLGHAPIRHNTTHLHPQHRRMLSQRMQNRGDHVGGRGVGERKNRDPYSNLMTQREKE
WVAKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDNRKEHTTKLITPQVAKLEHTYR
PVQFAGSLGKLTVSSVNNPRKMIDAVVTSRSDDEEKREKQVWNKRRQILYTVEKMYSLLL
EVQDFEKKFLQTPEHQRDVLLEQHKTHTLQLYNSLREKEWDDRVSDEQCLMIMSVRKGKR
LISRLLPFLPQPQAAAVVMGIARNLPALAKKDKQDQVLCWLVEPVSVVIQSMSSTSLTDL
LQELQGSEGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTREL
LKVPSSALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQITALSR
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtctcttgacgatgactgcaccctggaggaggaggaagggttggta
gaggaggaagatgaaatcgaccagttcaacgatgacactttcggtgcaggggcaatcgat
gatgattggcaggaggagcacacccgcctcgctgagctcgatgagcgtgtgcgagacgtg
ctgccaggagccggcgacagtgacaccagtcatgctggcagcaatgcccactcttcggtt
ctccctccaccttcctcttcctcccggctataccctgacatagatgaacggggcggcggt
gacctggcggagtcgcttactcgcctcatcctgggttcagatcctgccatagctggtgtg
ggcagcgccagctcagacagatctcaccttcctccgatgctgtccgctcagcctccgcat
ccgtcagcattagccggaccgtcttctctgctgcggagctaccagcagcatcagcagttc
ctgcataggggaccagctcctctttcacagataaactctcacagtatttgggagaacagt
atgggcttcagtcctgtcagtgttaactctggactaatcggtcaaaaagaggacaaaaca
ctactgtccattatcaaggaggtcgggcttccgaatcggcctccctcgctgagcagagat
gaagggcgtgatttgtctgaacgggttccgcctcctcgttccagctcaccagtgattgga
agcccaccggtaagggctgtacctattggaacacccccgaaacagcctatgagtcaaatc
ctcaatcagcagaataatcacccttcagctattcatgtgagagcgtctgtgccgatgcga
ttcccacctcccttccccgagcgtctgtcccccaataacctgctcagcatcgctaaatcg
cctttgtctcattctccgttccctgctggtgtcaatcctgttttgtctcaaatacaaaga
gctcaactgcttaactctcaggttggtcagttccagcgtggtccggctcctccattatta
cagggaggtgttgggggtttcaggccattttttggtcaatctgggcctagaataggtcct
cacgggcctcctctgggccatgcacccatccgacacaacaccacccacctgcacccacag
caccgcaggatgctcagccagaggatgcagaacagaggtgatcatgttggcggtagaggt
gttggagaaaggaaaaaccgagatccttacagcaatttaatgactcaaagagagaaggaa
tgggtggccaaaatccagatgatgcagcttcaaagcaccgatccatatctggatgattac
tattaccagaattactatgagaagatggagaagcgtcaggagcgggacagagacaacagg
aaggagcacaccaccaaactcatcacccctcaggtggccaaactggagcacacctatcga
cctgtgcagtttgcaggctcattaggaaaactcactgtctccagtgtcaacaatccaagg
aaaatgattgatgcagtggtcacctctcgcagtgatgatgaggaaaaaagagagaagcag
gtgtggaataaaagacggcaaatcctttacactgtggagaagatgtacagtctattacta
gaagtgcaagactttgagaagaagtttttgcagacgcctgagcaccaaagagacgttctg
ctagaacagcataaaacccacacgcttcagctctacaactcgctccgggaaaaagagtgg
gacgaccgagtgagtgacgagcagtgcttgatgatcatgtctgtgcgtaaagggaagcgg
ctgatctccaggctccttcccttcctgccacagcctcaggctgctgccgttgtcatgggg
atagccagaaaccttccagctctggccaagaaagacaaacaagaccaggtgctgtgttgg
ctggtagagccagtgtcggtggtgattcaatccatgtcgagtacctctctcacagatctc
ctccaggagctgcagggcagtgaaggacagctccctctcgtgctacagaataagtttggc
gtgacgctgctctatctgattctgagtgaaggagagcgaatgcagagctctgatccaaac
tgtcaactcatggacgacaaccgctggactgaattggtgttctctgtgacccgggagttg
ctgaaggtcccatcctctgctctctcatcaccgctgttcactcctccaaacctggtgtct
ctgttctctcgatatgtggaccgccagagacttgaactcttacaggagaaactacagatt
acggctttgtccaggtag
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