Danio rerio (zebrafish): 100037336
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Entry
100037336 CDS
T01004
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03030
DNA replication
dre03410
Base excision repair
dre03420
Nucleotide excision repair
dre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100037336 (rfc1)
03410 Base excision repair
100037336 (rfc1)
03420 Nucleotide excision repair
100037336 (rfc1)
03430 Mismatch repair
100037336 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dre03032
]
100037336 (rfc1)
03400 DNA repair and recombination proteins [BR:
dre03400
]
100037336 (rfc1)
DNA replication proteins [BR:
dre03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100037336 (rfc1)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100037336 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_7
AAA_5
AAA_30
AAA_33
Rad17
AAA_16
RuvB_N
BRCT_2
AAA_14
AAA_17
nSTAND3
RNA_helicase
NTPase_1
AAA_19
AAA_18
NPHP3_N
AAA_28
Motif
Other DBs
NCBI-GeneID:
100037336
NCBI-ProteinID:
NP_001082960
ZFIN:
ZDB-GENE-070410-99
Ensembl:
ENSDARG00000054799
UniProt:
F1Q5P6
LinkDB
All DBs
Position
1:complement(23243043..23268569)
Genome browser
AA seq
1147 aa
AA seq
DB search
MDIRRFFTSTKPVAQKASNGSTSTSTDEEQKKKQKSRPKVKSPKSDEKPSGKRKKRVIVD
SDSEEEKKVKTKKSTKETSIPTEKKHPVTYVSDSDSDGTFETLKKPKPKENGTAKGKKES
DSGKAKQVKVSSSKSPVKSPSTVKGGVKSSQPTVSPKVAPTPPKQMPTSVMAFFGSSSVQ
RSEKKMVASSSTKRKAPLETDESLSDEAIAKELQMDEDKELEKQIHDDEEFARTLAMLDD
APLPKKARVDSISPSKSSSQAIASDIKPKKDLSPKTSPVKTSSKLAQMKRRQEERDEQGK
KDKGEKQIKISPKKEPISPTSSERAATPKTASASAGMAKSRNLSTPKSESVPSKTSPTKP
ENTSPDDLEKKRANSSAYRSYLNREGPRALGSKDIPQGEENCLEGCVFVLTGVLESMERD
EAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAESFGTKIINEDELLDLIRTKPG
KKSKYEIAAEAENKSSKTRTPDSRGKVASSAKKATPQGPSPNKRSSSGGKSKPGSASKSG
ARGASCSEVKKSLSFDQTKTASPVSHSAPENDGSSLLWVDKYRPRSLKNLIGQQGDQSCA
NKLLRWLQSWHKHHSGNAKAPAPKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEE
LGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGN
EDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIA
FKEGLKIPPPALNEVILASNQDIRQVLHNLSMWSAKDKVMTYDQAKADANNAKKDMKLGP
FDVCRKVFALGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKSHLVLL
SKTADSICDGDLVDRQIRSKQTWSLLPTQAIYASVLPGELMRGYMSQFPNFPSWLGKFSS
SGKHSRIIQELASHMSLKTLSSKEAVNLDYLPYLRSAVLKPLQSLGSEGANQSVKLMDDY
DIIKEDVDNMMEISTWDGQPDPYSKLDSKVKAAFTRAYNKESHLTPYSLQVVKKSRKGAV
DPELLGELDNESQVQEEEEDDGLGADAMIKQKKSKPAKETKPAKDVKKEKPGPSGKGKGR
GKGKTKN
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggacatccggaggttttttacgtccaccaagcctgtggcccagaaagcttcaaatgga
agcacaagcacaagtactgatgaagagcagaagaagaaacaaaaatcaagacctaaggtc
aaaagccccaaatctgatgagaaacccagcgggaaaagaaagaaaagagttatagttgat
tcagactctgaagaagagaagaaggtaaagaccaaaaagagcactaaagagacttctatc
cccacagagaagaaacacccagtaacttatgtgtctgattctgattcggatggaacattt
gagactctgaaaaagcccaaacctaaagagaatggaacggctaaaggcaagaaggaatca
gattcaggaaaagcaaaacaagtgaaagtctcctccagcaaatccccagtcaaatccccc
agcacggtgaagggaggggtgaagagttctcaacccaccgtttcccctaaggtggcacca
accccaccaaaacagatgcccacatcagtaatggctttttttgggagttcaagtgttcag
aggtcggagaagaaaatggtggccagtagcagcactaagaggaaggcaccactggaaact
gatgagtcactcagtgatgaagccattgcaaaagaacttcagatggatgaagacaaggag
ctggaaaagcagattcatgatgatgaggaatttgctaggacattagccatgctggatgat
gctcccttaccaaaaaaggctcgggtagactctatctccccatccaagagcagctctcag
gcgattgcctcggacatcaagcccaaaaaggacttgtcccctaaaacaagtcctgtgaag
accagctccaaactggctcaaatgaaaagacgccaagaagaacgggacgagcaagggaaa
aaagacaaaggtgaaaagcagattaagatctctcctaagaaagagcccatctctccgact
agctcagagcgtgcagctacgccaaaaacagcaagtgcttctgcaggaatggcaaaatca
agaaatttgtccacacctaaaagtgaaagtgtccccagtaaaacctcaccaaccaaacca
gagaatacaagtccagatgacctggagaaaaaacgggcaaattcatcagcctaccgtagc
tatctgaacagagaaggaccacgagctctgggctctaaagacataccacagggcgaagag
aactgtctggagggctgtgtgtttgtgttgactggtgttttggagtctatggagagggat
gaggctaaatcactaatagagcgatatggcgggaaagtgacaggaaacgtcagccgtaaa
accacttaccttgttctgggacgagacagcggagtctcaaagactgagaaggcggaaagt
ttcggcaccaagattattaatgaagatgagttattggatctcataagaaccaaaccaggc
aagaagtctaaatatgagattgcagcagaagcagagaataaatcctctaaaacaaggact
ccagactccagaggcaaagtcgcttcttcagccaagaaggccacaccacaagggccaagc
ccaaataagagaagctcttcagggggaaagtctaagcctggatctgcctctaaatctgga
gcccgtggggcctcttgttcagaggtcaaaaagagcttgagctttgatcaaacaaagaca
gcatcccctgtatcccactctgccccagagaatgatggaagcagcctgttgtgggtggat
aagtaccgtccacgcagtctaaaaaacctgattggacagcagggggatcagagttgcgct
aacaagctcttacgttggctacagagctggcataaacaccacagtggcaatgcaaaagca
ccagcacccaaatttggtaaatttgggagtaaagatgacggttctggatttaaggctgca
ttgttatctggaccccctggtgttgggaagaccactactgctgctctcgtttgtgaggag
ttgggttacagctatgtggagatgaatgcgagctgcacccgcagtaagaacagcttaaag
gaggtcatcgcagaatcacttaacaacaccagcattaagaacttctacaccggtgcatca
cagacagtgagcagtaaacacgttcttataatggacgaggtggacggcatggcaggaaat
gaagacagaggaggaatacaggagatgattggtctgataaaacagtcaaagattcccatc
atctgtatgtgtaatgaccgcaatcatcagaagatccgctcgctggccaactattgctat
gacctgcgctttcagagaccccgcgttgagcagatcaagggagctatgatgtctatagct
tttaaggagggtttgaagattccacccccagcacttaatgaagtcatcctagcatccaat
caggatatccgacaggtgctgcataatctgagcatgtggtcagctaaagacaaagttatg
acctatgaccaggccaaagctgatgctaacaatgctaagaaggacatgaaactaggtcca
tttgatgtttgtcgaaaggtgtttgctttaggagaggaaacagctcacatgtctttgatc
gacaaatcagaccttttctttcatgattactctttagcaccactctttgtccaagaaaac
tacctgcatgtccgaccagccgctgcagggggaaatctgaagagtcatttggtgttgctg
agtaaaacggcggacagcatttgcgatggagatttagtggacagacagattcgctctaaa
cagacttggtctctgcttcccacacaggcgatctatgcaagcgtgttgccaggggaactg
atgcgtggttacatgagtcagttcccaaactttccaagctggttgggcaaattttcctca
tcgggcaaacacagccgcatcatacaggagctggcctcacacatgagcctcaagacctta
agtagtaaggaagcagtaaatctggattacctgccctatttgcgctcagcagtattaaaa
cctcttcagtccctaggctcagagggagccaatcagagcgtgaagctcatggatgattat
gacatcattaaagaggatgttgataacatgatggagatcagcacatgggatggacagccg
gatccgtactctaaactagactccaaggtgaaagctgcgtttacaagagcctacaacaaa
gaatctcatctcacgccatactccttacaagtggtgaagaaaagtcgtaaaggtgcagtt
gaccctgagcttctaggagagcttgacaatgaatctcaggtgcaggaagaggaagaagat
gatgggcttggtgcagatgcaatgataaagcagaaaaagtccaaaccagcaaaagaaacc
aaaccagcaaaagatgttaagaaagagaaaccagggccttctgggaaggggaaaggccgg
ggtaaaggaaagaccaagaactga
DBGET
integrated database retrieval system
