Danio rerio (zebrafish): 100136868
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Entry
100136868 CDS
T01004
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre02010
ABC transporters
dre04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
100136868 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100136868 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
dre02000
]
100136868 (abca1b)
Transporters [BR:
dre02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
100136868 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_22
AAA_23
Motif
Other DBs
NCBI-GeneID:
100136868
NCBI-ProteinID:
NP_001108058
ZFIN:
ZDB-GENE-030131-9826
Ensembl:
ENSDARG00000079009
UniProt:
F8W2X9
LinkDB
All DBs
Position
14:6424039..6519076
Genome browser
AA seq
2271 aa
AA seq
DB search
MSISTQLGLLLWKNFTYRRRQTLQLLTEIVWPLFIFFILIAVRLYYPPYEQHECHFPNKA
MPSAGTLPWIQGIVCNANNPCFRHPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
SLDGFKELIDAVKVMQNNTAGFKLKDFLHEDETLSTFLLQNASFTENYVTNILDADVNLE
KVLIKGFGVHLRDMCSSIKLEDFVTIPDTSVARFTQDMICRSPKNWLDQAESHFKSNLDF
LKPVRSEIRTNATDVRKVTKATDNLLESLGSLAVELASMRSWSDLRNEILFLTENATGSP
SLMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNFQALFGNHNDSDDQPVPVYDNTTTPYCN
SMMRNMEASPISRMIWRALKPLLMGKILYTPHSPATQKIIHEVNKTFQELGILRDLGGMW
EEARPKVWNFMENSNEMDLMRTLLLNNLTANFFSAQLAGTQWSVEDVISFLSKHSEDTRP
QGTAFTWRDVFNETDQAIMSISRFMECVNLDKLEPVSTEEKLVNESMSLLDNRKFWAGIV
FLDIPSNSSELPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFSYLQ
DVVEHSIIRAVTGSKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMYSVAIIIK
GVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVLLLKMGNLLPYSDPGV
VFLFLGSFAVVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFAAKV
IASLLSPVAFGFGCEYFALFEEQGVGIQWNNLFSSPVEEDDYNLTTCLILMYFDAFLYGV
MTWYIETVFPGQYGIPRPWYFPFTKSYWFGENSTNNTAIHGKKSNAGAVCIEEEPTHLKL
GVYIENLVKVYRHGKKLAVDGLTLGFHEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTA
YIMGKDIRSELSSIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEEVKAEMEQILS
DTGLPHKRKSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKY
RAGRTILLSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKNTEPS
LSSCRNSSSTVSFVKKDDNASESSSDAGLGSDQESEAATAIVDVTIISRLILKHVPAARM
VEDQGHEITYVLPYESAKNGAFVELFHDLDDRLADLGISSYGVSDTTLEEIFLKVAEDSG
VDTEMLSDGTLPVRRQRRHAFGADHQSCLKPLTEDDSFDCNESEGDPESKETDYLSGSDG
KGSYQVKGWSLKRQQFVALLWKRLLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGK
YPSLALNPWMYEEQFMFFSEDAPYDVSTHKLLRALFDDPGFGTRCMKGESIPDAPCTMGD
EEWSTPEVPESIIEILTTRNWTMNDPSPACECSCNGKKKMLPECPAGAGGLPPPQIKISE
TETLQNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARSTQVLPPAEEIDD
AISRVREIFQLGKDSGSAADRFLKSLSAFINGLDTKNNVKIWFNNKGWHSIGAFLNVMNN
GILRANLPPGKDPSEFGITAYNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPAS
FVVFLIQERVNKAKHMQFISGVQPYLYWLANFLWDMCNYVVPATLVILIFVCFQQKAYVS
ATNLPVLALLLLLYGWSITPLMYPASFLFKIPSTAYVVLTSVNILIGINGSISTFVMELF
GNHEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLEWDMVGK
NLFAMAVEGVVFFIITVLIQYRFFFEPKSLCPKLSPIGEEDEDVARERQRIMSGAGQGDI
LELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSVVTKGEAF
IAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPENEVCAVAEWGIRK
LGLVKYVDKNAGSYSGGNMRKLSTAISLIGAPPVVFLDEPTTGMDPKARRALWNCIHSVI
KEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPD
LQPVMKFIESELPGSTLKEKHRNMLQYQLPSSLTSLAHIFSILAKNKEFLRIEDYSVSQT
TLDQVFVNFAKDQSDDHSDSSISRKGTAVNMALLTPLSTKDSLEKPMESFV
NT seq
6816 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctccactcaactgggtctgctgctgtggaagaacttcacctacagacggaga
caaacgctccaactgctgactgagattgtgtggcctctctttattttcttcatcctgatc
gccgtgaggttgtactacccgccttatgaacaacatgaatgtcactttcccaacaaagcc
atgccctcagcaggcaccctgccctggatccagggcatcgtctgcaatgccaacaatccg
tgcttccgccacccaaccccaggggaatctcccggagtcgttgggaacttcaacgattcc
ataatctcacgccttttttctgatgccaagaagatcttgttgtatagtcaaaatgacaag
agcttggatgggttcaaggagctcatcgacgctgtaaaagtcatgcaaaataacacggcc
ggattcaagctgaaggacttcctgcatgaagacgagaccctctctaccttcctcctacaa
aacgcctcatttacagagaattatgttacgaatattctggacgctgatgtgaatcttgaa
aaggtgctgatcaaaggttttggcgtccatctcagagacatgtgcagctcaatcaaactt
gaggattttgtgaccatcccggacacaagtgtggccagattcactcaggacatgatctgc
aggtctcccaaaaactggctggaccaggccgagagtcacttcaagtccaatctggatttc
ctcaaacctgtcaggtcagaaataaggactaatgccactgatgtccgtaaagttaccaaa
gccacagacaaccttctggagagcctgggatcacttgctgtggagctggccagtatgagg
agttggagtgacctgcgaaacgagatcctgtttctgaccgaaaatgccactggctcccca
agtctgatgtaccaggctgtgtcccgtatcgtgtgtggacaccctgaaggcggtggcctc
aagatcaaatccctcaactggtacgaagacagcaacttccaggcgctgtttggcaaccac
aacgacagcgatgaccaaccggttccagtctacgacaacacaaccactccatactgtaac
agcatgatgaggaacatggaagccagtcccatctctcgaatgatctggagagcactgaaa
cctcttcttatggggaagattctctacactccacatagccctgcaacacagaagatcatt
catgaggtcaacaagacatttcaagagctcggaattctgcgagatttaggaggaatgtgg
gaagaagccagaccgaaggtttggaacttcatggagaacagcaatgaaatggatctaatg
cggacacttctactcaacaacctcacggctaatttttttagtgcccagttggctgggact
cagtggagcgtagaggatgtgataagcttcttgtccaagcactctgaagacacgcgtccc
caaggaacagcgttcacatggcgggatgtcttcaatgagaccgaccaggccattatgagc
atatcccgtttcatggagtgtgtaaacctggataagcttgaacccgtgagcacagaggag
aaactggtgaacgagtccatgagcctcctggataacagaaagttctgggctgggattgta
ttcttagatataccatctaacagctctgaacttccacccaacgtcaactacaagatccgc
atggacattgataatgtggaacgcacaaacaagattaaagatgggtattgggatccaggt
cccagggctgatccttttgaggatttgcggtatatttggggaggattttcctatcttcag
gatgtggtggagcacagcatcatcagagcagttactggatccaaagaaaaaactggtgtt
tacatccaacagatgccttatccatgttatgtagatgatatttttctgcgcattatgagc
cgctcaatgccactgttcatgactctggcctggatgtactcggtggccatcatcatcaaa
ggcgtcgtctatgagaaagaggcccggcttaaggagaccatgaggattatgggattggac
aacgggatcctgtggttcagctggtttattagtagcctcatccctcttctcattagcgca
ggcttgctggttcttctgctcaagatgggaaatctcctgccctatagtgaccctggggtc
gtcttcctcttcctcgggtcatttgctgtagtgaccatcatgcagtgtttcctgatcagc
acggcgtttgcacgtgccaacctggcagcggcctgcgggggcatcatctacttcactctc
tacctgccttatgtgctgtgcgtggcctggcaggactatgtgggcttcgccgccaaagtc
atcgctagcttactgtctccggtggcgtttggctttggctgtgagtattttgccttgttt
gaggagcagggtgtgggtattcagtggaataacctcttctccagtcccgtggaagaggac
gattacaacctcaccacctgcctcatcctcatgtactttgatgccttcctgtatggggtc
atgacctggtacatagaaacggtgttcccaggacagtatggcattcccaggccatggtac
ttccctttcactaaatcctactggtttggagagaacagcacaaacaatactgcaatacac
ggaaagaagagcaatgcaggggctgtttgcattgaagaggaacctactcaccttaaactg
ggagtttacattgagaatctggtgaaggtctatcgccatggtaaaaagctagccgtggat
gggttgacacttggttttcatgaaggtcagataacatccttcctgggtcacaacggagct
ggcaaaaccaccaccatgtctatcctcacaggccttttccctcccacctctggcactgca
tacatcatgggcaaagacattcgttcagagctgagttcaatcaggcagagcctcggagtg
tgtccacaacacaatgtcctcttcagcatgttgacagtagaagagcacatctggttctat
gctcgcctgaagggtctgtctgaggaagaagtgaaagctgagatggagcagatcctgagt
gacactggccttccgcacaaacgcaaatccagaaccagccagttgtcaggtggtatgcag
aggaagctctcagtagctcttgctttcgttggagggtcaaaggttgtcattctggacgag
cctactgctggtgtggatccatatgctcgtagaggcatttgggaccttttattgaagtac
cgtgcaggtcgtacaatacttctttctacccatcatatggatgaagcagacattctgggt
gatcgaattgctatcatctcccatggaaagctttgctgtgtgggctcctcgctgtttctt
aagactcaactgggcaccggatactatcttacattagtgaagaagaacactgagccttct
ctcagttcttgcaggaactcaagtagcactgtgtcatttgttaagaaagatgataatgca
tctgagagcagttcggatgctggtctaggtagcgaccaagagagcgaagcagccacagca
atcgttgatgtaaccatcatttccaggctaatcctaaagcatgttcctgctgcccgcatg
gtggaagaccaaggccacgagatcacatatgtgttgccatatgagtctgctaaaaacggt
gcttttgttgagctcttccatgacctagatgatcggcttgcagaccttggcatttccagc
tatggtgtctcagatactacacttgaggagattttcctaaaagtggcggaggacagcgga
gtcgacactgaaatgctctcagacggaactctgccggtgcgcagacagagacgacatgca
tttggtgctgatcaccagagctgcctgaaacccctgaccgaagacgatagctttgactgc
aatgaatctgagggtgatccagaatccaaagaaactgactatttgagtgggtcagatggc
aaaggatcatatcaggtgaaaggctggagtctgaagaggcagcagtttgtggctttatta
tggaagagactgctttacgctcgccgctctaggaaaggattctttgcacagatcgttctt
cctgctgtgtttgtgtgcatcgctctggtattcagtctcattgtgccgccatttgggaaa
tatcccagcctggctcttaatccctggatgtatgaagagcagttcatgttcttcagtgaa
gatgctccttatgacgtaagcacacataagttgctcagagctctgtttgatgatcctggc
tttggaacacgatgcatgaaaggagaatcaattccggatgctccctgtacaatgggcgat
gaggaatggtctacaccagaagtgccagaaagcataatagagattttaacaacaaggaac
tggactatgaatgacccatcgcctgcttgtgagtgcagctgtaatggcaaaaagaagatg
ctcccagaatgccctgcgggtgcaggcggtctcccacctcctcagattaagatcagtgaa
actgagactctccagaacctgacaggacgaaacatctcagactatctagtgaagacctac
gcacagatcattggaaaaagcttaaaaaacaagatctgggtgaacgaatttagatatgga
ggattttcattgggagccagaagcactcaggtacttcctccagctgaggagattgacgac
gccatctctagagtcagggagatcttccaactggggaaggactcaggatcagcagccgac
cgtttcttaaaaagcctgtctgcatttatcaatgggttggacactaagaataatgtcaag
atttggtttaataacaagggctggcacagtattggggccttcctcaatgtaatgaacaac
ggtatcttgcgtgcaaacttaccacccggtaaagaccccagtgagtttggcatcactgcg
tacaaccatccactcaatctgaccaaggaacagctttctcaagtggcgctgatgactacc
tcggtagacgtgctggtttccatctgcgtgatcttcgccatgtctttcgtccctgctagc
tttgttgtcttcctcatccaagagcgagtgaacaaagccaagcacatgcagtttatcagt
ggagttcagccatatctctactggctggcaaactttctctgggatatgtgcaattatgtt
gttcctgccactctggtgatcctgatctttgtgtgctttcaacaaaaagcctacgtttcc
gccaccaacctgcctgttcttgccctgcttctgcttctatatggatggtccatcactcct
cttatgtacccagcatccttcctctttaaaatccccagcactgcttatgtggttctcaca
agcgtcaacatcctcattgggatcaatggcagcatttcaacatttgtcatggagttattc
ggaaatcatgaaattggaggaattaatgacatcctgaagaacgttttgctcatcttccca
catttctgcctgggtcgaggtctcatcgacatggtgaagaatcaggccatggctgacgct
ctggagagatttggtgagaaccgtttccgttctccactggagtgggacatggtgggtaag
aatcttttcgctatggctgtggagggtgtggttttcttcattatcaccgtcctcatccag
tacagattcttctttgaacccaagtctttatgtcctaaattgagtccgattggagaggaa
gatgaagatgtagccagagagaggcagaggatcatgagtggggccggacagggagacatt
ctcgaactccgacagctcactaaggtgtacaagcggaaacaaaagcctgcagtggatcgt
ctgtgtgttggcattcctccaggagagtgtttcggtctgcttggtgtcaatggagcagga
aaaaccagcacttttaaaatgctgaccggagattctgtggtcaccaaaggagaagcgttc
atagctgggaaaagtatacttagggaaatcgatgaagtacatcagaatatgggctactgt
cctcagtttgatgccatcaatgatctgctaactggacgggaacacctggaattttatgct
atcctgcgtggtgtacctgagaacgaagtttgtgcggtggcggagtggggaatccgtaaa
ctgggcctggtgaagtatgtggacaaaaacgctggaagctacagtggaggaaacatgcgc
aaactgtccaccgccatatcactgattggagctccaccagtggtcttcctggacgagccc
accactgggatggaccccaaagcacgcagagccctgtggaactgcatacacagcgtcatc
aaagagggccgatctgttgttctcacctcacacagcatggaggagtgtgaagctctgtgc
accagaatggccatcatggtgaacggcaggtttcgctgtctgggcagcgtccagcacctc
aagaacagatttggcgacgggtacaccatcattctaagggtggcaggccctgatcccgac
ctgcagccggtgatgaagttcatcgaaagcgaacttccagggagcacgctgaaagagaag
cacagaaacatgctgcaatatcagctgccttcatcactcacatccctcgctcacatcttc
agcatcctcgccaaaaacaaagagttcctgcggatagaggattactccgtctcccagacc
acactagaccaggtgtttgtaaactttgcgaaggaccaaagtgacgaccactcggacagc
tcaatcagccgtaaagggacggcggtgaacatggccctgctgactccgctgtccactaaa
gacagcctggagaagcccatggagagcttcgtatga
DBGET
integrated database retrieval system
