Danio rerio (zebrafish): 100144628
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Entry
100144628 CDS
T01004
Symbol
shmt2
Name
(RefSeq) serine hydroxymethyltransferase, mitochondrial
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre00260
Glycine, serine and threonine metabolism
dre00630
Glyoxylate and dicarboxylate metabolism
dre00670
One carbon pool by folate
dre01100
Metabolic pathways
dre01200
Carbon metabolism
dre01230
Biosynthesis of amino acids
dre01240
Biosynthesis of cofactors
dre04981
Folate transport and metabolism
Module
dre_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
100144628 (shmt2)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
100144628 (shmt2)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
100144628 (shmt2)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
100144628 (shmt2)
Enzymes [BR:
dre01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
100144628 (shmt2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Motif
Other DBs
NCBI-GeneID:
100144628
NCBI-ProteinID:
NP_001116846
ZFIN:
ZDB-GENE-071213-1
Ensembl:
ENSDARG00000104414
UniProt:
A9LDD9
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All DBs
Position
6:59176470..59230818
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AA seq
492 aa
AA seq
DB search
MLTLTLRQITRPLCRRVQRSSAAVCVRADGSWTGQESLSQDDPEMWDLLLKEKDRQCRGL
ELIASENFCSRAALEAQGSCLNNKYSEGYPGKRYYGGAEVVDQIELLCQKRALEAFDLDP
QLWGVNVQPYSGSPANFAAYTAVLNPHERIMGLDLPDGGHLTHGYMSDVRRISATSIYFE
SMPYKLNPKTGLIDYDQMELTAKLFRPKLIIAGTSAYARLIDYCRIKTLCSEINAYMLAD
MAHISGLVAAKAIPSPFQHADIVTTTTHKSLRGSRAGLIFYRKGVRSVDKKGKEIMYDLE
EKVNFSVFPSLQGGPHNHAIAGVAVALKQATSPMFREYIAQVLKNSKAMAAALLDKGYTL
VSGGTDNHLVLVDLRPQGMDGARAERVLELVSITANKNTCPGDKSALTPGGLRLGTPALT
SRQLKECDFQKVVEFIHQGIQIGQDVKKKTKKLSDFKSFLLEDAETVSRIADLRSRVEAF
ARPFPMPGFHDH
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgctgacactgacattacgacaaataaccaggcccctgtgccggcgtgtccagcgctcc
tccgcagcggtgtgtgtgcgcgccgatggctcctggacgggccaggagagtctgtctcag
gatgacccagaaatgtgggatctgctgctgaaggagaaggacagacagtgtcgaggactg
gagctcatcgcctctgagaatttctgcagtcgtgcggctctggaggctcagggttcgtgt
ctgaacaataagtactcagagggatacccggggaagaggtattacggcggagcggaggtg
gtggatcagatcgagttgttgtgtcagaagagagctctggaagcgtttgatctggacccg
cagctctggggtgtgaatgttcagccctattctggatctccagcaaacttcgctgcgtat
acagcagtgctgaacccacacgagcgcatcatgggcctggacctgcctgatggtggacat
ctcacacacgggtacatgtctgacgtccgccgcatctccgccacttccatctactttgag
tcgatgccctacaaactcaaccctaaaacaggcctgatcgactatgatcagatggagctg
acggcgaaactcttcagacccaaactcatcatcgctggaaccagcgcctacgcccgactc
atcgactactgccgcatcaagacgctgtgcagcgagatcaacgcatacatgctggccgac
atggcgcacatcagcggactggtggcagctaaagctattccctcaccattccagcacgca
gacatcgtcaccaccaccacacacaaatcactgcgaggctccagggcgggacttatcttc
taccgtaagggtgtacgttcggttgataagaagggcaaagagatcatgtatgatctggag
gagaaggtcaacttctctgtgttcccttcgcttcagggcggcccacacaatcacgccatc
gccggcgtcgcagtggctctcaaacaggccacgtcgcccatgtttcgagagtatatcgct
caggttctgaagaactccaaggccatggcggccgcactgctggacaagggatacacactc
gtctctggtggtactgataatcacctggtgctggtggatctgcggccgcaggggatggac
ggagcgcgtgcggagcgagtgctggagctggtgtccatcacagccaacaagaacacctgc
cctggagacaagagcgcactcacacctggaggactgagactgggtaccccagctctgacc
tctcggcagctgaaggagtgtgacttccagaaggtcgtggagttcattcatcagggcatc
cagatcgggcaggacgtcaagaagaagaccaaaaagctctctgattttaagagtttcctt
ctggaagatgcagagacggtttctcgaatcgcggatctgcgcagtcgtgtggaggcgttc
gcgcgtcccttccccatgcctggattccacgaccattaa
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