KEGG   Danio rerio (zebrafish): 100148871
Entry
100148871         CDS       T01004                                 
Symbol
dhx58
Name
(RefSeq) ATP-dependent RNA helicase DHX58
  KO
K12649  ATP-dependent RNA helicase DHX58 [EC:5.6.2.6]
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04622  RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:dre00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    100148871 (dhx58)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:dre04054]
    100148871 (dhx58)
Enzymes [BR:dre01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100148871 (dhx58)
Pattern recognition receptors [BR:dre04054]
 Cytoplasmic pattern recognition receptors
  RIG-I-like receptors
   100148871 (dhx58)
SSDB
Motif
Pfam: RIG-I_C-RD RIG-I_C ResIII DEAD Helicase_C SWI2_SNF2 DUF2850
Other DBs
NCBI-GeneID: 100148871
NCBI-ProteinID: NP_001244086
ZFIN: ZDB-GENE-120612-3
Ensembl: ENSDARG00000089463
UniProt: F1QUY3
LinkDB
Position
3:16359917..16446431
AA seq 679 aa
MELRLRPYQEEVVQAALRGENSIIWLPTGGGKTRAAVYVAEKHLETKANAKVAVLVNKVH
LVDQHYMKEFGHYLRHKYRIKAISGDSSEKDFFGRLVRVSDLVICTAQILENALNNMDED
KHVEITDFTLLVIDECHHTNKESVYNKIMWRYVEKKVRKEGRLPQILGLTASPGTGGNKS
LDKAVEHVLQICANLDSKIVSTKNYTPMLQNFVPKPKKEYDIVERRDKDPFGDHLKSMML
MIHEFMPPTVSRGLRELGTQEYEADVVELEKAGVKVNNRLIAQCALHLRKYNDALLINDT
IRMVDAFRVLEEFYNSRSSKLLDGTDIFLQGLFDENSLELKHLASDARYENPKLAQLQSR
LLEEFQDTNSRGIIFSKTRRGTHCLNDWVKTNRELQRVNITAGILTGAGNGANNMTQTEQ
KSVISHFRQGYLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARASNSVYS
VVADVGGREVRKELVNEYLEDLTARAIDEVQRMSPVDFRHKVFELQKTAVVIRMEAERKR
DAKKQRYSPGQVQLQCRSCFASVCSGGDIRKIENSHHVNVNTEFKNHYKVGDQVNMERTF
EDWEPGRIISCRKCKKDWGFEIKFKKVAILPCLKIKSFSFNTPKETKPYKKWKDVEFQVT
EFDFIEYMSCRFPDLDLSD
NT seq 2040 nt   +upstreamnt  +downstreamnt
atggagctcagactcaggccatatcaggaggaggtggtccaggcggctttaagaggagag
aacagcatcatctggctgcccactggtggaggaaaaactcgtgctgcggtttacgtcgct
gagaaacatctagagaccaaggccaatgccaaagtggcagtgctcgtcaataaggtgcac
ctggtagaccagcactatatgaaagaatttggccattacctaaggcacaaatacaggata
aaggccatcagtggtgacagcagtgagaaagacttttttgggcgtcttgttagagtctca
gacttggtcatctgcacggctcagattctggaaaacgccttgaacaacatggatgaggac
aagcacgtggagatcactgattttaccctactgatcatagatgaatgtcatcacacaaat
aaggagagtgtctataacaagattatgtggcgttacgtggagaagaaagtgagaaaagaa
ggcagactgcctcagattttgggcctcacagcatcacctggtacaggaggaaacaagtca
ttggataaagctgttgaacacgtcctgcagatctgtgccaatctggattcaaaaattgtg
tccaccaagaattacacaccgatgctgcagaactttgtgccaaaacccaaaaaggaatac
gacattgtcgaaagaagagataaagatccatttggtgaccacttgaagtcaatgatgtta
atgattcatgagtttatgccagcaacggtgggtagcagcctgagagaactaggcacccag
gaatatgaggctgatgtggtggaactggagaaagcaggtgtaaaagtaaagaacagactg
atcgctcagtgcgctttgcatctacgcaaatacaatgatgcccttctcattaatgacacc
attcgcatggtggatgcgttcagagtgctggaagagttttacaatacaagaagcagcaag
ttgctggatggaacagacatctttctacaaggacttttcgatgagaacagtctggagtta
aaacatctggcgtcggacgcccgatatgaaaaccccaaactagctcaactgcagagcaga
ttgctggaagagttccaagacactaattctcgtggaatcatcttctcaaagacacgcaga
ggcacgcattgtctgaatgactgggtgaaaacaaaccgtgagctgcagagggtcaacatc
actgctggcattctgaccggagccggtaatggcgctaacaacatgacacagactgaacag
aagagcgtcatcagtcattttaggcaaggatacctcaacctcctcatctccaccagtgta
gctgaggaaggactggatattcctgaatgcaacttagttgtgcgttacgggctgttgacc
aatgaaatcgctcagcagcaggccagcggacgagctcgagcctccaacagtgtctactct
gtggtggctgacgtaggtggacgggaagtgcgcaaagaacttgtcaatgagtatctagaa
gatctcaccgcaagagctattgatgaagtacagcgcatgagtcctgtggacttcagacac
aaggtgtttgagctccagaaaacagctgtggtgattcggatggaggctgaacggaagagg
gatgcgaaaaagcagcgctatagtccaggtcaggttcagcttcagtgcagaagctgcttc
gcttccgtctgcagcggaggagacatcaggaagatcgagaactcgcaccatgtcaacgtt
aacactgagtttaaaaatcactataaagttggtggccaggtgaatatggagaggaccttt
gaagactgggagcctggacggattatcagctgcagacgttgtggagaggactggggattc
gagattaaattcaagaaagtggcaattctcccctgtctgaaaataaagagcttctccttt
aacacccctaaagaaacaaagccttacaagaagtggaaggatgttgagtttcaggtgaca
gagtttgactttattgagtacatgagctgccgtttccctgacctggacttgtctgactga

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