Danio rerio (zebrafish): 100149241
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Entry
100149241 CDS
T01004
Symbol
tmc6a
Name
(RefSeq) transmembrane channel-like protein 6 isoform X2
KO
K21988
transmembrane channel-like protein
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
100149241 (tmc6a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
dre02000
]
100149241 (tmc6a)
03037 Cilium and associated proteins [BR:
dre03037
]
100149241 (tmc6a)
Transporters [BR:
dre02000
]
Other transporters
Pores ion channels [TC:
1
]
100149241 (tmc6a)
Cilium and associated proteins [BR:
dre03037
]
Other cilia and associated proteins
Stereociliary proteins
100149241 (tmc6a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TMC
Rotamase_2
Motif
Other DBs
NCBI-GeneID:
100149241
NCBI-ProteinID:
XP_017210326
ZFIN:
ZDB-GENE-081114-3
Ensembl:
ENSDARG00000069787
UniProt:
A0A8M6Z556
LinkDB
All DBs
Position
3:61983897..62021262
Genome browser
AA seq
726 aa
AA seq
DB search
MAASRIMETIPGEDGDLFELEAVWRPNREVRFDLTHANEDIEAHYNEPKHRHTLQRSSWS
SSTQKVLSSMPSRSMKWNQAAAVNQSRSTKTQQRRPLSICTEDQDVFTDQDDYVDDELLK
KLQGLSVGESAQLLREMPLSVSEKRQMRELVVCWESGKPRSANRPLCLYWFQTCLKKVVH
SDWSGRQKSLQLWQKVFKNISAHFGMGVLSYFVFLRRLLLFNLLLMLINGLFLLLPQLSN
PSSSTRTSSEAEHKSNLWMLTGMGILTDSVMFYGHYSDCQNGSSECFENYNIPLAYIFTF
GTGMFVTCVKLVYNMSKAFGKSQSSTNTRSLVFKVFCSWDFKVYKKRSVRLQSVNICTQL
KEMLSELSCKKQKRNLCSMLRWLSLHLLVWSICLLCMGACIFAVNYFHLVRPINSHDAEP
VYLLILPLAVSAYSRLLPVLFDMLSRVEQYNSPDIRIYVSIARNLLLKGCIFTALCLWFG
EIKPKKNEQCWETMVGQELYRLIVMDLIFEVLYIILAQFFWGFCVRNVTLRRRKLEFAIA
QEVLELIYSQTLVWFGVLFSPLLPAVQIGKLYVLFYLKKTSLMVNFHAPKKHWRASQMSN
LFIKLLFIPSFTGALTCVIYVMWSVKPSSGCGPFRNFDSMLLIIDQAKNSHSLNWLNSAY
IHWVYNPLFLFLISGAFLAIIYIHMQVVDGQKVITGRLQKQINFEGEDKKFLIDKIQALN
ELKSQQ
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggctgcatcccgcatcatggagaccattcctggggaagatggagacctgtttgaactg
gaagctgtttggaggccaaaccgagaagtcagatttgatctgacacatgcgaatgaagac
atagaggcacattacaatgagcccaaacacagacacactctgcagaggagcagctggtcc
tcttcaacccagaaggttctgtcatccatgcccagccgctctatgaagtggaatcaagct
gctgcagtcaaccagagcagatccaccaaaacacaacaaagaagacctctctccatctgc
actgaagaccaggatgtctttacagatcaggacgactacgtagatgacgagttgctgaag
aaactgcaaggtttgtctgttggtgaaagtgcacagctgctgcgggaaatgcctcttagt
gtatctgagaagcgtcagatgagagaactggtggtctgttgggaatctggaaagcctcgc
tctgctaacagacccctgtgcctctattggtttcaaacttgtttgaagaaggttgtgcat
agtgactggtctggaagacagaagtccttacagctttggcagaaagtgtttaaaaacatc
agcgctcattttggcatgggagttctgtcttacttcgtcttcctcaggagacttttactc
ttcaacctcctcctcatgctcatcaatggcctgttcctgctcctcccacaactctcaaat
ccatcttcatctacacgtacatcttcagaagcagagcataaatctaacctgtggatgctt
actggcatgggcattctcacagactcggttatgttttatggccactattccgactgtcaa
aatggaagtagcgaatgttttgagaattacaacattcctctggcctatattttcactttt
ggaactggcatgtttgtcacatgtgtaaagcttgtttacaacatgtctaaagcattcgga
aagagccaatcatctacgaataccagaagtcttgtttttaaggttttttgctcatgggat
tttaaagtctacaagaaacggtctgtaagactgcagtcagtgaacatctgcactcagctg
aaggagatgttgtcagagctcagctgcaaaaaacaaaagaggaacttgtgttcgatgttg
agatggttgagtttacacttgctggtatggtccatttgtctgctgtgcatgggcgcctgc
atctttgcagtgaattacttccaccttgtcaggccgatcaattctcatgatgctgagcct
gtgtatttgctgatcctgcctttggccgtgtctgcctacagtcgtctgctgcctgttctc
ttcgacatgctatccagagtggagcaatacaactcaccagacatccgcatttatgtgtct
atcgcaaggaatctgttgttgaagggctgcatttttactgccttgtgtctctggtttgga
gaaattaaaccgaaaaaaaatgaacagtgctgggagacaatggtgggtcaggagctttac
cgtttgattgtgatggatctaatatttgaagtgctgtacatcatcttggcgcagttcttt
tgggggttttgtgtaagaaatgtcacactgagaagaagaaaactggagtttgccattgct
caagaagtcctggagctcatctacagccaaactcttgtgtggtttggtgtgctgttttca
ccactgttgcctgcagtgcaaattgggaaactttatgtccttttctacctcaaaaagacc
agcttgatggtgaatttccatgcccccaaaaaacactggagagcctctcagatgagcaat
ctcttcatcaaactccttttcatcccgtccttcactggagctcttacatgtgtcatatac
gtaatgtggagtgtcaagccctcatcaggctgtgggcccttcaggaattttgacagtatg
ctgttgatcattgaccaggcgaaaaatagtcacagtttaaactggctcaactcggcttac
attcactgggtgtacaatcctttgttcctcttccttatatcaggagcatttttagctatt
atatacattcacatgcaagttgtggatggccaaaaggtgataacaggaaggttgcagaag
cagataaactttgaaggtgaagataagaagttccttatagataaaatccaggcgctcaat
gagctgaaatctcagcagtga
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