Danio rerio (zebrafish): 100329953
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Entry
100329953 CDS
T01004
Symbol
arfgef1
Name
(RefSeq) brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1
KO
K18442
brefeldin A-inhibited guanine nucleotide-exchange protein
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
100329953 (arfgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dre04131
]
100329953 (arfgef1)
Membrane trafficking [BR:
dre04131
]
Endosome - Golgi transport
Arf GTPases and associated proteins
Arf GTPase associated proteins
100329953 (arfgef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec7
BIG2_C
Sec7-like_HUS
DCB
Sec7-like_HDS
Herpes_UL14
Type_ISP_C
Motif
Other DBs
NCBI-GeneID:
100329953
NCBI-ProteinID:
XP_009295669
ZFIN:
ZDB-GENE-030131-108
Ensembl:
ENSDARG00000063474
UniProt:
A0A8M3AZ36
LinkDB
All DBs
Position
24:complement(18737138..18877082)
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AA seq
1870 aa
AA seq
DB search
MYEGKKTKNMFLTRALEKILADKEVKKAHHSQLRKACEVALEEIKQESEKLSSPVGDNKS
SSSTLPPIKSKSSFIEADKYFLPFELACQSKCPRIVITSLDCLQKLIAYGHLTGSAPDNT
TPGKKLIDRIIETICGCFQGPQTDEGVQLQIIKALLTAVTSQQIEIHEGTVLQAVRTCYN
IYLASKNLINQTTAKATLTQMLNVIFARMENQALTNHKISWSLASRKRDRQLQEAKQMER
ERHRQHSPVSQQEPESPGQRHTETPGKTLPAEGNGGPGHQGGKVEQGSPPYESPEPENGS
DFCPAENEQTEADQATAAAQSAAEHATEASEEDERQNYEEKAQEIVESVLLEVVNTVATG
NMYVTEMKASHEGEAESAEVSPNSLEEEGGLGSDNENVHANGIPGTPISASFTPSLPDDR
LSVSSNDTQESVATSGQAPGAKFSHILQKDAFLVFRSLCKLSMKPLSDGPPDPKSHELRS
KVLSLQLLLSILQNAGPIFKTNEMFINAIKQYLCVALSKNGVSSVPEVFELSLSIFLTLL
SNFKTHLKMQIEVFFKEIFLYILETSTSSYDHKWMVIQTLTRICADAQSVVDIYVNYDCD
LNAANIFERLVNDLSKIAQGRGGHELGTTPLQELTLRKKGLECLVSILKCMVEWSKDQYV
NPNSQTSLGRAGQEKPSEQESNESKHPETINRYGSINSLDSTASSGIGSYSTQMSGTDNP
EQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSIQVG
EFLGDNDRINKEVMYAYVDQMDFQGKDFVPALRMFLEGFRLPGEAQKIDRLMEKFAARYL
ECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEY
LSAIYDEIAGKKISMKETKELTLKSNKQSVASEKQRRLLYNVEMEQMAKTAKALMEAVSH
VQAPFTSATHLEHVRPMFKLAWTPFLAAFSVGLQDCDDTEVASLCLEGIRCAIRIACIFS
IQLERDAYVQALARFTLLTASSGITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEIMKCI
SQLELAQLIGTGVKARYISGTVRGKEGFITSTKEQTSDEYLGLGGNVDRKQIASIQESIG
ETSSQSVVVAVDRIFTGSTRLDGNAIVDFVRWLCAVSMDELASPTHPRMFSLQKIVEISY
YNMGRIRLQWSRIWEVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQK
DFLRPFEHIMKKNRSPTIRDMVVRCIAQMVNSQAGNIRSGWKNIFSVFHLAASDQDESIV
ELAFQTTGHIVTNVFEKHFPATIDSFQDAVKCLSEFACNASFPDTSMEAIRLIRHCAKYV
SDRPQAFKDYTSDDMNVAPEDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEVMKT
YGHTYEKHWWQDLFRIVFRIFDNMKLPEQQTEKAEWMTTTCNHALYAICDVFTQYFESLS
DVLLDDILSQLYWCVQQDNEQLARSGTNCLENVVILNGEKFNPETWDKTCNCMLDIFKTT
IPHMLLTWRPAGAEGDHMTQLESDKQLDSISQKSVDIQTRSDDQQSVNSMEKALADNRRY
SQFSVASEAQEQRLFAALLIKCVVQLELIQTIDNIVFFPATSKKEDAENFAAAQRDALDA
DIHVDTQDQGMYRYLTSEQLFKLLDCLLESHRFAKAFNSNNEQRTALWKAGFKGKSKPNL
LKQETSSLACGLRILFRMYTDPSRRDAWEEVQRRLLNVCSDAVAYFLTLTSESHREAWTN
LLLLFLTKVLKISDDRFKAHASRYYPLLCEIMQFDLIPELRAVLRKFFLRIGLVFQITNS
LETNQTVSNA
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaaggcaaaaagacgaaaaacatgtttttaaccagagctttggagaagatcttg
gccgacaaggaggtgaaaaaggctcatcactcgcagctgcgcaaagcctgtgaggtggca
ttagaggaaatcaagcaggaatcggagaaattaagctcaccggtcggcgacaacaagtcg
agttccagcactttgccaccaatcaagtcgaagagcagcttcattgaagcagataaatac
ttcctgccatttgagttggcctgtcagtccaaatgtcctcgcatcgtcatcacctctcta
gactgtttacagaaactcatagcgtatggtcacctgacgggcagcgctccagacaacacc
acaccagggaagaaactcatcgacaggatcatagagactatatgtggctgctttcagggc
ccgcagacagacgaaggagtccagctacagattataaaggccttgctgacagcggtgaca
tcccagcaaatagagatccatgagggcacagtcttacaggccgtcagaacatgctacaac
atctatctggccagtaaaaacctcatcaaccagaccacggccaaagccaccctcacccag
atgctgaatgtcatattcgcccgcatggagaaccaagcacttacaaatcacaagatcagt
tggtctttggcatcaagaaagcgagatcgtcagctgcaggaagccaagcagatggagaga
gagcgccacagacagcattctcctgtcagtcagcaagagcctgaatctcctggacagagg
cacaccgagacccctggcaaaaccctgccagctgagggcaacggtggacctggacatcag
ggtggtaaagtggagcagggttccccaccgtatgagagtcccgagccagagaatggaagt
gacttctgtcctgcggagaatgagcagaccgaggctgaccaggccaccgctgcagcacaa
agtgcagcagagcatgccactgaagccagcgaggaggatgaaaggcagaactatgaagag
aaggcgcaggagattgtggagagcgttttgctagaagtggtgaacacagtggctacagga
aacatgtatgttacagaaatgaaggcaagccatgagggtgaggctgagtctgcggaggtc
agtccaaactctctggaagaggagggaggcttgggcagcgacaacgaaaatgttcacgct
aacggcatccctggcactcccatctccgcaagcttcaccccatccctgcccgacgacagg
ctgtctgtctcttctaatgacactcaggaatcggtagccacctctggtcaagcaccaggc
gcaaagttttctcacattctccagaaagatgccttcctggtgtttcgttccctctgcaaa
ctctccatgaagcctctttcggatggaccgcctgatcccaaatcccatgagctgcggtcc
aaggtcctctctctgcagctcctcctgtccattctgcagaacgctggacccatcttcaag
accaacgagatgttcatcaacgccatcaagcagtacctgtgcgtagcgctgtctaaaaac
ggcgtctcctccgtccccgaggtgttcgagctgtctctgtccatcttcctcaccctcctg
tccaacttcaagacacatctcaagatgcaaatcgaggtgtttttcaaagagatttttctg
tatattctggaaacttccacaagctcatatgaccacaagtggatggtcattcaaaccctc
actagaatatgtgctgatgcacagagtgtagtagatatctatgttaattatgattgtgac
ctgaatgctgctaatattttcgagaggctggtgaatgacctctcaaagattgcacaagga
cgaggaggtcatgaactgggtacaaccccacttcaggagctgactttaagaaagaaagga
ttggagtgtctggtgtccattctcaagtgtatggtggagtggagcaaagaccaatacgtc
aaccccaattcccagacaagtcttgggagagcaggccaagaaaagccttcagagcaggag
agcaatgagtcgaagcatccagaaacgatcaaccgttacggcagcattaactctttggac
tccactgcatcatcaggcattgggagctacagcacacagatgtccggaacagacaacccg
gagcagtttgaggtcctcaaacaacagaaggagatcatagagcaaggcattgacctgttc
aacaaaaaaccaaagaggggcattcagtacctgcaggagcaaggcatgctgggaacaacg
cctgaagatattgcccagtttttacatcaagaggagagacttgactctatccaggtagga
gagtttctaggagacaacgaccgcatcaataaagaggtcatgtatgcctacgtcgaccaa
atggacttccagggcaaagacttcgtgccagcgctgcgcatgttcctggagggtttccgt
ctgcccggcgaagcccagaaaattgatcgactgatggagaaatttgctgctagatattta
gaatgcaaccaagggcaaacactgttcgccagcgctgacaccgcatacgttcttgcgtat
tcaatcatcatgttgactaccgatctgcacagtccacaggtgaagaataaaatgacgaaa
gagcaatacatcaagatgaatcgaggtatcaatgacagtaaagatttaccggaggagtat
ctctcagccatttatgatgaaatcgcagggaagaaaatctccatgaaggagacaaaggag
ttaactctcaaatcaaataagcaaagtgtggcgagtgagaagcagaggaggctgctgtat
aatgttgagatggagcagatggcaaaaacagcaaaggctctgatggaggccgtgagccac
gttcaagcccccttcaccagcgccacacatcttgagcatgtcagaccaatgtttaagctg
gcctggacgccctttctggctgctttcagtgtgggtctgcaggactgtgatgacactgaa
gtggcctctctgtgtctggagggaatccgctgtgccatcaggatagcatgcatcttcagc
attcagttggagcgagacgcatatgtacaggctctggcccgtttcacactcttgacggcc
agttctggcatcactgaaatgaagcagaagaacatcgacaccatcaagaccctcatcaca
gtggctcacactgatggaaattatctaggaaactcctggcatgagatcatgaagtgcatt
agtcagctggagttggcccagctcatcgggacaggagtgaaggctcggtacatatcagga
actgttcggggaaaggaaggctttatcaccagcaccaaggaacaaacgtctgatgaatac
ctgggattgggagggaatgttgatcgcaaacagattgcaagcattcaggagtctatcggg
gagaccagctcgcaaagtgtagttgttgctgtagaccggatattcacgggctctaccaga
cttgatggaaatgccattgtggactttgtgcgatggctgtgcgctgtctcgatggatgaa
ctggcctccccaacacaccctcgaatgttcagtctgcagaagatcgtggagatttcatac
tacaatatgggtcgtatcaggttgcagtggtccaggatttgggaggttataggggatcat
ttcaataaggttggctgtaatcccaacgaagatgttgctatttttgctgtggattctctg
aggcagttgtccatgaagtttttggaaaagggagagttggccaatttcagattccagaag
gatttcctcaggccgttcgagcacataatgaaaaagaacagatctccgaccattagagac
atggtggttcgctgtattgcccagatggtcaactctcaggctggcaatattagatcaggg
tggaagaacattttctctgtgtttcatctggctgcttctgatcaggatgagagtatagtt
gagctggccttccagacaactggacacatcgtcacgaatgtatttgagaagcatttccca
gctaccattgactccttccaggacgctgtcaagtgtttgtctgagttcgcctgcaacgct
tcttttccagacaccagcatggaggctattcgtctgatccgccactgcgccaaatatgtg
tcagaccgaccccaggcgtttaaagactataccagtgatgatatgaatgttgccccggag
gaccgtgtttgggtcagaggctggttccccatcctttttgagctgtcatgcatcatcaac
agatgcaaactggacgtccggaccaggggtctgacagtgatgtttgaggtgatgaagacg
tacggtcatacctatgagaaacactggtggcaggatctgttccgcatcgtcttcaggatc
ttcgacaacatgaagcttcctgagcaacagaccgagaaagcggagtggatgaccaccacc
tgcaatcatgcactttatgccatctgtgacgtttttacacagtactttgagtctctcagt
gatgttcttttagatgatatcttatctcagctctactggtgtgtccagcaagataatgag
caattagccagatcaggcactaactgccttgaaaacgtggtcatccttaatggtgagaag
ttcaatcctgagacttgggacaagacatgcaactgcatgctggacatcttcaaaaccacc
atcccacacatgctgctgacttggagaccggctggtgctgaaggagatcacatgactcag
ctggagtctgataaacagctggactccatttcccagaagtcagtggatattcagacccgc
tcagatgaccagcagtctgttaacagtatggagaaggctttggctgacaaccgcagatac
agtcagttcagtgtggcttcagaagctcaggaacagaggctgtttgctgcgctactcatt
aagtgtgtggttcagctggagctcattcagaccattgacaacatcgtcttctttcctgct
accagtaagaaagaagatgcggaaaactttgcggctgcacagagagatgctttagatgct
gatatacatgtggacacacaggaccagggaatgtatcgctatctgacctcagaacagctc
ttcaaactgctcgactgtctgctggagtctcatcgatttgcaaaggccttcaactccaat
aatgagcaaagaactgctctgtggaaagccggtttcaaagggaagtcgaagcccaatctg
ctgaaacaggagacgagcagcctggcgtgtggtctgcgcatcctcttccgcatgtacaca
gatccaagccgacgggatgcctgggaggaggtgcagaggagactgctcaacgtttgcagt
gacgcagtggcttattttctgaccctcacgtctgaaagtcatcgcgaagcctggacaaac
cttctgctgctcttcctgaccaaagtgctgaagatcagtgatgatagattcaaggctcat
gcgtcccgctactaccctctgctctgtgaaatcatgcagttcgacctgatcccggagctg
cgggccgtcctgcgcaagtttttcctgcgcattggactggttttccagatcaccaacagc
ctggaaacaaatcaaactgtcagcaacgcctaa
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