Danio rerio (zebrafish): 100331704
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Entry
100331704 CDS
T01004
Symbol
col14a1b
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
dre00535
]
100331704 (col14a1b)
Proteoglycans [BR:
dre00535
]
Extracellular matrix (ECM) proteoglycans
Others
100331704 (col14a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
NDNF
DUF4959
VWA_3
Motif
Other DBs
NCBI-GeneID:
100331704
NCBI-ProteinID:
XP_073787350
ZFIN:
ZDB-GENE-030131-1985
LinkDB
All DBs
Position
19:82486..113568
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AA seq
1805 aa
AA seq
DB search
MPRRLRFKELSSDTLSVSWKEPKGAFDRYTLLYRTHAGDERELLISNSENSAVIQNFNRS
REYRVNITAVRGAERSKALLGTYTASQQVSAVGSVQQQDSSADQDTEISDVDVFSCRSPA
VADIVVLVDGSWSIGRINFRLVRLFLESLVRAFTVGAEHTRIGLAQYSGDPRIEWHLNTH
ATKEAVIEAVKNLPYKGGNTLTGLALTYILENSFKAESGSRADVPKIGILITDGKSQDDV
QFPAQRLRDAGIELFAIGVKNADENELRAIASPPEDTHVYNVADFSVMSSIVESLTRSVC
ERVSELSLEISGETDPDSSKTLDAPRDLLTSEVTARSFRVSWTHATGPVEKYRVVYYSSS
GAQPEEVVVNGDENSVVLQYLNSMTEYQITVFAIYSNSASEALRGSETTLVLPTVSSLQL
QDVTHSTMRVRWREAEGASGYMILYAPLTEGDAADEKELKVADSVTQVDLDGLTPATEYT
VTVYALYGEDASDPMTAQETTLPLTPARNLRISDVTHSSAKLTWDTPSPQVKGHKIVYVK
TDAVETNQAEVGVVSTVELRNLSAVTEYTIAIFAVYAEGQAEPLTNTFTTSLAPAPMNLR
SSEVSSESFRVTWTHPAPDVTFYRLTWRPAAGGETKEVLINDHSERFLLSALQPNTEYEV
SLSAIYRDESESEPVELSETTAARTTTVATTSARTTPAAQRLAVRNLQLSDVTTYSMRVS
WDPAGPSARQYRVSYISTRGDRAEQTAMVPAGQSWVLLQPLLSDTEYRVSVCAVYSDGES
PPITRIARTLPLSAPSGLRVSEQWYNRFRISWVAPPSPTMGYRIVYQPTTGGRALETFVG
DDVNTMLIVNLLSGTEYSVKVIATYTTGSSDALSGRAQTLYLGVSNLSSYQVRATSMCVQ
WQPHRHASQYRLVLQPQLHGEKQEMRLPGSASRHCFSELSPNTQYSISVHTQLQETEGPA
VSTTERTLPVSTAPPTIASSSAPPPTLPATKEVCRAAKADLVFLVDGSWSIGDDNFQKII
RFLHSTAGALDQIGPDGTQVAIAQFSDDARTEFSLSSHSSKEELLTAIQRVSYKGGNTKT
GRAMKHVKDSVFAPVGGARRGVPKVLVVLTDGRSQDDVLQVSQELQAEGYIVFAIGFADA
DYGELLSIASRPGDRHVFFVDDLDAFRNIEEKLITFVCEAASATCPSVPMSGSTLPGFRM
MEMFGLVEHLYSSVDGVSLEPGTFNSYSSYRLARDALLTQPTRFLHPEGLPSDYTISMLF
RLLPETPPEPFALWEILNSSNEPLVGVILDIAGKTLTFFNTDYKGDFQTVTFEGAEIQKL
FYGSFHKLHIAVSKTSAAVMVDCRSAGEKPVNAARNISTDGLEVLGRTVRSRGSKDNSAP
FQLQSFDIVCSTSWARRDKCCELPSLRKEADCPSLPRACTCTQDSKGPPGPAGPPGGPGI
RGARGDRGEPGPVGPVGPVGDAGVPGAQGPPGPPGPSGRSIRGPLGAPGESGQKGDAGPP
GPQGVPGSPGSVGRDGPPGLRGLPGQDGPQGRVGPPGPIGGPGAPGAPGENGPPGPTGDQ
GPPGAAGPKGEKGERGEVQSTASVQAIARQVCEQLIQSHMARYSSILNHIPSQPVSIRTV
PGPPGEPGRQGLPGPQGEQGPPGRPGFPGTNGENGQPGARGVQGEKGEKGNPGVGVQGPR
GPAGTPGPPGEGRTGSPGPSGRPGSPGSPGRPGIPGPVGPAGPPGYCDQNACLGYNVGGA
DLTDIDVPVVQLPPSSYQPYGPEGEAEEADPYGSYGSYYQPNYPPPRPVQEEEEELRSPG
MQRQT
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atgcccagaaggctgcgttttaaagagctgagctctgacacactctctgtgagctggaag
gagccgaagggagcgttcgacagatacacactgctgtaccgcacacacgctggagatgag
cgtgagctgctgatcagtaactctgagaacagcgccgtcatccagaacttcaaccgcagt
agagaatacagagtgaacatcacggcggtcagaggagccgagcgcagtaaagccctgctg
ggcacatacaccgcatctcagcaggtgagtgctgtcggctcagtacagcagcaggactcc
agcgctgatcaggacaccgagatctcagacgtggatgtgttctcctgtaggtctcctgca
gtggctgatatcgtggtgttggtggacggctcctggagcatcggccggataaacttccgt
ctggttcgtctgtttctggagagtctcgtcagagcgttcactgtcggggcggaacacact
cgcatcggtctggcgcagtacagcggtgatccgcgtatcgagtggcatctgaacacacac
gccactaaagaggccgtgatcgaggctgtgaagaacctgccttataaaggaggaaacaca
ctcacaggtctggctctgacctatattctggagaacagctttaaggctgagtcgggttcg
agagctgacgttcctaagatcgggatcctgatcacagacgggaaatctcaagacgacgtt
cagtttccagcgcagagactccgagacgcaggcatcgagctgttcgccatcggggtgaag
aacgcagatgagaatgagctgcgtgcgatcgcgtctcccccagaggacacacacgtgtat
aatgttgctgatttcagtgtgatgagctccatcgtggagagtctgacccgcagtgtgtgt
gagcgcgtgtccgagctcagcctggagatcagcggtgaaactgatccagattcctccaag
actcttgatgctcctcgtgaccttctgacctctgaggtcacagccaggagcttccgtgtg
tcatggacgcacgccacaggcccagtggagaaatacagagtggtgtattactcctccagc
ggagctcaacctgaggaggtggtggtgaacggcgatgagaactccgtggtgttgcagtat
ctgaactctatgacggagtatcagatcacagtgttcgctatttacagcaactcagccagc
gaagccctgagaggcagcgagaccaccttggtgctgccgacggtcagcagtctgcagctg
caggacgtcacacacagcactatgcgtgtgcgctggcgagaggctgaaggggcctctggg
tacatgatcctgtatgcaccactgacggagggagacgccgctgacgagaaggagctgaaa
gtggctgactctgtgactcaggttgatctggacggtttaactcctgctactgaatatacg
gtgacggtttacgctctgtacggggaggacgccagcgaccccatgactgcgcaggagacc
acgcttcctctgactcctgcacgtaacctgcgcatctcagacgtcacacacagctccgct
aaactgacctgggacacgccctctccacaggtcaaaggtcacaaaattgtatatgtgaag
acggacgccgtggagaccaatcaggctgaggtgggcgtggtcagcacagtggagctgcgt
aacctgagcgcagtgaccgaatacaccatcgccatcttcgcagtgtacgcggagggccag
gcggagccgctcacaaacaccttcaccacctcgttggctccggccccgatgaacctgcgc
tccagtgaggtgtccagcgagagcttcagggtcacctggacccaccccgcacctgacgtc
accttctacagactcacctggagaccagcggctggaggagagactaaagaggtgctcatc
aatgatcactcagagcggttcctcctctcggcgctgcagcccaacactgaatatgaggtt
tctctgtccgccatttacagagacgagtccgagagcgagccggtggagctgagcgagacc
acagctgccagaacaaccacagtggctacgaccagcgcccggacgacaccagccgcgcag
cgtctggccgtcaggaacctgcagctcagtgatgtgaccacctacagcatgcgtgtgtcg
tgggaccctgcgggcccgagtgcgcgtcagtaccgcgtgtcgtacatcagcacacgagga
gatcgtgcagagcagacggcgatggttcctgcaggtcagagctgggtgctgctgcagcct
ctgctgtcagacactgagtaccgcgtgagtgtgtgtgcggtgtacagcgacggagaatct
ccaccaatcacacgcatcgcccgcacactgcctctgtctgcccccagtggtctgcgtgtg
tcggagcagtggtataaccgtttccgcatcagctgggttgctccgccctcgccgaccatg
ggctacaggatcgtctaccagcccacgacaggtgggcgtgctctggagacatttgtgggt
gacgatgtgaacaccatgctgatcgtcaacctgctgagcggcaccgagtacagcgttaag
gtcatcgccacctacaccaccggctccagcgacgccctgagcggacgcgcacagacactg
tatctgggcgtcagtaacctcagcagttatcaggtgcgggcgaccagcatgtgtgtgcag
tggcagccgcaccgccacgccagccagtaccgcctcgtcctgcagccgcagctccatggt
gagaaacaggaaatgaggctgccaggctccgcctccagacactgcttcagtgagctgagc
ccgaacacacagtacagcatcagtgttcacacacagctgcaggagaccgagggccccgcc
gtcagcaccaccgagaggacgcttcctgtgagcacggctccacccaccatcgccagcagc
tccgcccctccgcctaccctgcccgccactaaagaagtgtgtcgagctgctaaagctgat
ctggtgttcctggtggacggctcgtggagtatcggagacgataacttccagaagatcatc
cgcttcctgcacagcacggctggagctctggatcagatcgggccggacgggactcaggtg
gccatcgctcagttcagtgacgacgcgcgcacagagttcagcctcagctcacacagcagc
aaagaggagctgctcaccgccatccagagggtcagctataaaggaggaaacaccaagaca
ggccgagccatgaagcatgtgaaggactctgtgtttgcgccggtgggcggggccagaagg
ggcgtgcctaaagtgctggtggtgttgacagacggccgttcccaggacgacgtgctgcag
gtgtcccaggagctccaggctgaaggctacatcgtgttcgccatcgggttcgcggacgcg
gattacggcgagctgctgagcatcgccagtcgccccggagacagacacgtgttctttgtg
gacgacctcgacgccttccgcaacatcgaggagaagctcatcaccttcgtctgtgaagca
gcctcagccacgtgtccttctgtacccatgagcggcagcactctaccaggcttccgcatg
atggagatgttcgggctggtggagcacctgtacagtagtgtggacggcgtgtcgttggag
ccgggaaccttcaacagctacagcagctacagactggccagagacgcactgctcacacag
cccaccaggttcctccaccctgagggtctgccgtctgactacaccatctccatgctgttc
cgcctgctgcccgaaacgcccccggagccctttgcattgtgggaaattctcaacagcagc
aacgagcccttagtaggcgtcattctggacatcgcagggaagaccctaaccttcttcaac
actgactataaaggagacttccagaccgtcacgtttgagggagccgagatacagaagctg
ttctacggcagcttccacaagctgcacattgcggtcagcaagacgtctgcagcggtgatg
gtggactgccgctctgcaggggagaagcctgtaaacgcagccagaaacatcagcactgac
ggcctggaggtcctgggccgcaccgtccgctccagaggctccaaagacaactctgccccg
tttcagctgcagtcctttgatatcgtctgcagcacatcatgggctcgacgggacaaatgc
tgcgagctgcccagcctgaggaaggaagctgactgtccgtctctgccgcgtgcctgtacc
tgcactcaggacagtaaaggcccccctggacccgccggacccccgggaggtcctgggatc
agaggtgctcgaggagatcgtggtgaacccggccctgtgggtcctgttggtccagtaggg
gacgctggtgttcccggtgctcaggggcctcctggtcctccagggcccagcggacgctcc
atcagaggccctctgggcgctccgggtgagtcgggtcagaagggtgatgctggtcctcca
gggccacagggtgttcctggatctccggggtctgtgggccgtgatggacctccagggtta
cggggtctaccgggtcaggacgggcctcagggtagagttgggccaccgggacccattgga
ggtccaggagcccccggagccccaggtgagaacggccctccaggacctacaggagaccag
ggccctccgggagccgcggggcccaaaggggagaagggtgagcggggtgaagtccagtcc
accgcttctgttcaggccatcgccagacaagtgtgtgagcagctgatccagagccacatg
gcgcgctacagctccatcctgaaccacatccccagtcagccggtgtccatccgcacggtt
ccggggcccccaggagagcccggccggcaggggcttccaggacctcagggagagcagggg
ccgcccggacgacccggattccccggcaccaacggagagaacggccagccgggagccaga
ggtgtccagggggagaagggcgagaagggtaatccgggtgttggtgtccagggaccacga
ggacctgctggaactccagggcctcctggtgaaggcagaacaggaagtccaggaccatct
ggtcggcctggaagccccgggagtcccggaagacccggaataccaggaccggtgggtcca
gcaggtcctccaggatactgcgaccagaacgcctgcctggggtacaacgtaggaggcgct
gacctcactgacatcgatgtccctgtagttcagcttccgccgagctcctaccagccgtac
gggccggagggtgaggcggaggaggcagacccgtacggcagctacggctcctactatcag
cccaactacccaccgccacggcccgtccaggaggaagaggaggagctgcgctcgcccggc
atgcagaggcagacctga
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integrated database retrieval system
