Danio rerio (zebrafish): 100333121
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Entry
100333121 CDS
T01004
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100333121 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dre01009
]
100333121 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
dre04515
]
100333121 (pcdh11)
Protein phosphatases and associated proteins [BR:
dre01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100333121 (pcdh11)
Cell adhesion molecules [BR:
dre04515
]
Cadherins
Protocadherins
100333121 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
Fibulin_C
DUF6249
Prominin
Motif
Other DBs
NCBI-GeneID:
100333121
NCBI-ProteinID:
XP_005173247
ZFIN:
ZDB-GENE-140106-21
Ensembl:
ENSDARG00000098652
UniProt:
A0A8M2BKI4
LinkDB
All DBs
Position
14:complement(26995117..27297566)
Genome browser
AA seq
1224 aa
AA seq
DB search
MDLASEAHVLVVLFTCLFLMCRAQEKDYTVKEEQPENVRIGNLRKDLNLNLDPDIKLSSA
LQFKPVYKTGDVPLVKVEASTGEILTTANRIDREKLCSGVFNEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDINDNAPLFQSTVINISIPENTAINSRYPVPSAFDPDIGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQSLDRETKDTFVMKIKVEDGGNPPKSSTAILQVTVS
DVNDNRPVFKDSEVEVNVPENAPMGTSVTHLHATDADLGSNAQIHFSFSNQISPSTKRHF
AIDSTTGLITVKQPLDREVNPVHKLIVLASDGSSTPSRATVIVNVTDINDNVPSIDTRYI
MNLVNGTVLLSENAPLNTKIALITVTDRDSDLNGKVTCYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIRIVASDSGKPPLNTSAMVLIKIKDENDNVPVFPQPEIQLSIPENND
PGTQLIKISATDADSGSNALIIYSLGPDAPDGFNIDSRSGILSVVKRLDREKQEKYSFTV
IARDNGTTPLQSNVTVKLIVQDQNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAVVTLSIINGKDNFIIDPKTGVIKPNITFDREQQSSYTFVVKAVDAGLMQTTSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVPSNTSPGSVVTRVFAIDNDTGMNAELQYSIIGGSL
RGLFTIDKTTGNITLQEKIVAADQGLHRLVVKVKDLGQPESLHAIALVHLFVNDTVSNAT
FIQEQLRKSLETPLERNIGDNDVTPQTNGYVIVVIAIIAGTMTVILVIFVTALVRCRQTP
RHKVVQKSKQSGEWVSPNQDGRQIKKKKKKKKRSPKSLLLNFVTIEETKSDDPTHEHVNG
TLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPVAPKKHHV
IQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKAPGQIHTRQNQTPDKAFPVV
PTMCPHKQTQRRVTFHLPDGSQESCSDSGLGEPEPNSAASITQPLPLGFPQDEYYEQTSP
NSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGHSDSCWMPPALTQFQTSNATT
LPSFGFQQSWARGIKPDGRHTLGRSVPKDDLDKGSNRPQFYNTLERHCSKKEDPVKVIPL
ASFSATSSPQMSSSGGAFLHEHQL
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atggacttagcaagtgaggcccatgttctggtggttttattcacctgcttgttcttgatg
tgccgggctcaagaaaaggactacaccgtaaaagaggagcagccggagaatgtgcgcatc
ggaaacctgcgcaaagacctaaacttgaacctggatccagacattaaactgtcttctgcg
ctgcagtttaaacctgtctacaagacaggtgatgtgcctttagtcaaggtagaagccagc
acaggagaaattcttaccacagccaaccgaatcgaccgcgagaaactctgttctggagtc
ttcaacgagaagcgctgctattatgagattgaggttgctgtactacctgatgagattttc
cgactggtcaagatccgcttcctcatcgaagacatcaacgacaatgccccactctttcag
tcgacagttatcaacatctccattccagaaaacacagccatcaacagccgctacccagtc
ccttccgcatttgaccctgatataggaatcaatgggattcagcactatgagcttgtcaag
agtgtgagtgaatttggcttggacatcattgagacacctgagggagacaaatggccccaa
ctcatagtccagcagagccttgatcgagagacaaaggacacctttgtgatgaaaattaaa
gtagaagatggtggcaaccctccaaagtccagcacagccattcttcaagtgaccgtctca
gatgtgaatgacaatcggccggtgttcaaggacagcgaggtggaagtaaacgttccagag
aatgccccaatgggaacgtctgtcactcacctccatgctactgatgctgatctgggatcc
aatgctcaaattcacttctctttcagcaaccaaatatccccttccaccaaacgacatttt
gctattgacagcacaactggactgattaccgtcaagcagccactggacagggaagtcaac
ccagtgcacaagcttatagttctagccagtgatggaagctctacaccttcaagggctaca
gtgatagtcaacgtgacagacattaatgacaacgttccctctatagatacccgttatata
atgaatcttgtaaatggcactgtgctgttgtctgaaaatgccccactcaacacaaaaata
gccctaattactgtgacagacagagattcagatctgaacggtaaagtgacatgttacact
gatcatgatgtaccttttagattgaagccggtcttcaatgatcagtttttacttgaaact
gctgcacccttagattatgagaccactcgagagtatgcgattcggatagttgcatctgac
tctgggaaacctcctttaaacacttctgcaatggtgctgattaaaatcaaggatgaaaat
gacaatgttcctgttttcccccagcctgaaatccagctgtccatcccggaaaacaatgac
cctggcacacagttgataaaaatcagtgcaacagatgctgatagtggttctaatgctctt
attatttatagtcttggcccagatgctcctgatgggtttaacatagattctcgatctgga
attctttctgttgtcaaaaggctagatagagagaagcaggagaagtattcattcacagtc
attgcaagggataacggtacaactcctcttcaaagcaacgtcactgtaaagctgatagtc
caagaccaaaatgataacagtcctgcctttacccatcccgagtacaacttttatgtgcct
gagaaccttcctttgtatgggacagtgggtttgatcactgtcacagatgcggatgctggc
gacaatgcagtcgtcaccctctcgatcattaacgggaaggacaatttcatcattgacccc
aaaactggggtgatcaagccaaacattaccttcgacagggagcaacaaagctcctacaca
tttgttgtcaaggctgtggatgcaggtctaatgcaaaccacctcatatgcaaaggtcact
ataaatgttgttgacgtgaacgacaatcgaccagtgtttgtcatcccctcctcaaactac
tcctatgatctagtaccttcaaacaccagccctggatctgtggtgaccagagtgtttgct
atagataatgatactgggatgaatgctgagctccagtatagtattattggagggtcgctg
agaggactgtttaccattgacaaaacgacaggcaacattactttgcaggaaaagattgta
gcagcagaccaaggtctacataggctggtggtgaaggtcaaggacttggggcagccagag
tccttacatgcaattgcccttgtccatttgtttgtgaatgatacagtctctaatgccacg
ttcattcaggagcaactacgcaaaagtttagagactcctttagagcggaacattggggac
aatgatgtgacaccccagactaatggctatgtaattgtcgttattgccataattgctggg
actatgactgttatcctggtaatttttgtaactgctttggtacgctgtcgacagacaccg
agacacaaagttgttcagaagagcaagcaaagtggcgagtgggtttcacccaaccaggac
ggtcggcagattaaaaagaaaaagaagaagaagaagaggtctccaaaaagtttactgttg
aattttgttaccattgaggaaaccaagtctgatgaccctactcatgaacacgtgaatggc
accttagacctacctgttgaacttgaggagcagacaatgggaaagtacaactgggctacc
acaccaactaccttcaaacccgacagtcctgacttagccaagcactacaaatccgcttcc
cctcagccaacattccagatcaaaccagagacccctgtggctcccaagaagcatcatgtc
attcaggaactcccactggacaacacattcgtggtgggctgtgactcgctttccaaatgt
tcctccagcagctccgacccctacagcgtttcagagtgcagctgtcaagggggcttcaag
gcacctggacaaatccacaccagacagaaccagaccccggataaagcattccctgttgtc
ccaaccatgtgccctcacaagcagacacagcggcgcgtgaccttccacctgccggacggt
tctcaggagagctgcagtgacagtgggcttggagagccggagcccaacagcgctgccagc
atcacccagcctctgcccctaggcttccctcaggatgagtactatgaacagacctcaccc
aacagccgaaccgagggtgacggcaactctgaccccgagtccactattgaagtgaacctg
cagaaggctcttgccgaggcctcggagacctgtacccaggaatgtctgatcctgggtcat
tctgacagctgctggatgccgccagcgctgacccaattccaaacgtccaacgccaccact
ctgccctcctttggttttcagcaaagctgggcacgggggatcaagccagacgggcgtcac
acccttggcaggtcggtgcccaaagatgatctggacaaagggagcaaccggccccaattc
tacaacacacttgagagacactgcagcaagaaagaggatcctgtcaaggtcatccctcta
gccagcttttctgccacatccagcccccagatgtcctcgagcggaggagcctttctgcac
gagcatcagctgtaa
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integrated database retrieval system
