Danio rerio (zebrafish): 100334979
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Entry
100334979 CDS
T01004
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dre03036
]
100334979 (tdrd12)
Enzymes [BR:
dre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
100334979 (tdrd12)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100334979 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
Helicase_C
CS
Motif
Other DBs
NCBI-GeneID:
100334979
NCBI-ProteinID:
XP_068073693
ZFIN:
ZDB-GENE-121214-348
Ensembl:
ENSDARG00000075217
UniProt:
A0AB32TJS0
LinkDB
All DBs
Position
25:complement(37161561..37186855)
Genome browser
AA seq
1362 aa
AA seq
DB search
MLEIQIIKIEDPGCLWARVLKGPGLQVVSPEEYENLKVRMNLFYHEVDLDVQKLKPSELK
EGLVCVVFSVALKSWCRAIVESVLQGVLDTQAWCLLVDYGDRIIVREDDVRTPLEKFLLL
PFRVRRFRLAAVRPMTLQVPLSEDTAELVPSASWDSSATKYLLNLLQVSTLVEAVLCETQ
DDCSSIELYLTINNTKICVNHELVAKKFACFVSDADGSRSTDRAPVSLAWDIYSSPHQLL
EMKGCCPLRAPPPDTPTRKQRTDHTHTEAEQQKAEAAEEIHTPSVGKPQVQKLRRNPGTY
TIGRGWRIRAEATDLFTAQIHHSKSQYMKFTTLLQPKQIPESVEEKQSSPGQTDDNSEGS
RVYNAIDSEELKEADLPQEPSLDDHLACARLMQFLNPDPLNPDQETVDAKVARCDPGHSG
VLVHSAIRIEPCSNLTRAPITEQFRKFLLWRKYSGPNVAESYCWPAVARGFDTVLVSHSG
DNPLSYIPPLLMILQTVSVVSSLAARTGPVAVILCPGWEKVQTVLELLEDSKATHGLHPT
SVLLGVDQDEPKKFKIQKNCQLLVTTPFSLLRLLEAQCFLFLRLCHLVLDEADLLYSQAP
DQISIILKHFQQLVCAEERVACPRQIIAVGGRWSAGIDGLVREHMIHPTVIITVMEEAAL
YGRVHQRVQLCLDCDKVSVLLSSLDFQPPKPQKTLIITNSAEETEHVYKAVVNTAVFTLK
AHEDATDQFDFIIDQWRKDISQGTQVILVTTNDCLKALGIRDATCVVHYGFPSTPKLFGS
RLFCMSENFRKLSDMDHSEDWTPGAQSVLLLSEQNVRHVCGVLRYLRRTGALLPPELLQF
ALGIQQAKEEQKTHRPLCCSLKSFGFCRDSTVCPDRHTINTSLDQTQLPDSGMIMVLPLF
IKTASVYCGRIVRQKEDLYEDLATQMKLHYASERRCAVEVLKGALYAIQEENCYHRVRVL
EVPEKGEQLFSSVTACLIDEGRTQEVKSHQLLQLPAQFQDLPGQAVEIILCRVQPVDGEV
DWNPKVTRAVSLKIRGKLHQARVVMSLGNTIWVDPMVRMVRVPGLKTFINEYNVHTEILA
SGFGVSNPQHVDLLKTVLQRDQNHNMLDQQLSEHRFESALLSSQQRMEVSEDFLTSRMKD
LVSAHNAMFIQNNTAVVCNGGMKSGEDAELSARSAGSDLNGFASLIHTGPSSSESESDEA
VDQLRTLNNNNNNTPQAPYNSKLFSFQPTSFHPQIKWFQRGESVTVCIKLINPVMQKCEF
SCDAVVYSGYVNDRHYYAKLELFGDIIAEECSWEMKCNEPVMKLMKKDKRDWTTLLKHKS
AFVSYEFDRIEEACVTVNGHSFLAEVGEDGCYVSSESDSDSD
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgctggaaatacaaataatcaagatcgaggacccgggctgtctgtgggctcgagttctg
aagggtccaggcctgcaggtggtcagtccagaggaatacgagaacctgaaggtcagaatg
aaccttttctatcatgaggtcgacctggatgttcagaaactgaagccttcggagctgaaa
gagggactggtgtgtgtggtgttcagcgtggccctgaagagctggtgtcgagctattgtt
gagtccgtcctgcagggggtgctggacactcaggcctggtgtctgttagtggactacgga
gaccgcatcatcgttagggaggacgacgtcaggactccgcttgagaagttcctgctgctt
cccttccgtgtgcggcgcttcaggctggccgccgttcgtcctatgacactgcaggtgccg
ctctctgaggacacggccgagctggtgccgtctgcatcgtgggacagctccgccactaaa
tacctgctcaacctgctgcaagtgtcgactctggttgaagccgttctctgtgaaacacaa
gacgactgctcctccatcgagctctacctgaccatcaataataccaagatctgtgtgaac
catgagctggtggccaagaagtttgcgtgtttcgtgagcgatgcggacggcagcagaagc
acagatcgggctccggtcagtctggcgtgggatatttactccagtcctcatcagctgctg
gagatgaagggctgctgcccgctcagagctccgcccccggacacgcccaccagaaagcag
cgcacagaccacacacacacagaagcagagcagcagaaagcagaagcagcagaggaaata
cacacaccgtctgtggggaaacctcaagtgcagaagctgcgccgtaatcctggaacatat
actatcggcagaggatggaggatccgagctgaagccactgacctcttcactgctcagatt
caccacagtaaatcacagtacatgaagtttaccacacttttacagccaaagcagattcct
gaatctgtggaagagaagcagagcagccctggtcaaaccgatgacaacagcgagggttca
cgtgtttacaatgctatcgactctgaggagctgaaagaggcagatctcccacaagagccc
agtctggatgatcatctggcctgtgcacgacttatgcagtttctgaacccagatccactc
aatccagaccaggaaactgttgatgccaaagttgcgcgctgtgatccgggtcactctggt
gttttggttcactccgccattcgcattgaaccctgcagtaacctgacgcgcgccccaatc
acagagcagttcagaaagttcctgttgtggaggaagtacagtgggccgaatgtggcggag
agctactgttggcctgctgtggctcggggttttgacacggtgctggtttctcacagcggg
gacaatcctctgtcttatattcctcccctgctgatgatcttacagacggtttctgtggtc
tccagcctcgccgctcgcacagggccggtagccgtaatcctctgtccagggtgggagaag
gttcagacggtgctggagctcctggaggacagtaaagccacacacggtctccatcccacc
agtgtgctgctgggtgtggaccaggacgagcccaagaagttcaagatccagaagaactgt
cagctgctggtcacgaccccattctctctgctccggctgctggaggctcagtgtttcctc
ttcctgcgtctctgtcacctggttctggatgaggcggatctgctgtactcgcaggctcca
gatcagatctccatcatcctgaaacacttccagcagctggtgtgtgcagaggagcgggtg
gcgtgcccacggcagatcatcgctgtgggtggacggtggagcgcgggcatcgacgggctg
gtgagggaacacatgatccacccgaccgtcatcatcactgtcatggaggaggcagcgctg
tatggcagagttcaccagagggtgcagttgtgtctggattgcgataaagtctcggttctt
ctctcgtcgctggatttccagccgccaaaaccgcagaaaactctgatcatcacaaattct
gcagaggaaacggagcacgtgtataaggcggtggtaaacactgcggtcttcacactcaaa
gctcacgaggacgcgacggaccagttcgacttcatcattgatcagtggaggaaggacatc
agccagggaacgcaagtcattctggtgaccaccaatgactgcctgaaggccctcggcatc
cgggatgccacctgtgtggtgcattatgggtttcccagcaccccgaagctgttcggcagc
cgcctgttctgcatgtcggagaatttcaggaagctgtcagacatggatcacagtgaggac
tggacccccggagctcagtctgtgctgctgctgtcggagcagaacgtccgtcatgtgtgc
ggtgtcctgcggtacctgcggagaaccggtgctctgctgcctccggagctgctgcagttc
gctttgggcatccagcaggccaaggaggagcagaagacgcaccggccgctgtgctgctcg
ctcaagagcttcggcttctgcagagacagcacagtttgtccagacagacacacaatcaac
acgtctctggatcagacgcaacttcccgactccgggatgatcatggttctgccgctgttc
atcaagacggcgagtgtgtactgcgggcgtatcgtcagacagaaggaggatttatatgag
gatctggcaacccagatgaaactgcattatgccagtgagagacgctgcgctgtggaggtg
ctgaagggggcgctgtatgccatccaggaggagaactgctaccaccgtgtgcgtgtgctg
gaggtgccggagaaaggagagcagctgttcagcagcgtcaccgcctgcctcatagacgag
ggccgcacacaggaagtgaagtcacaccagctgctccagcttcccgctcagttccaggat
ctgcccggccaggcggtggagatcatcctgtgcagagttcagcctgtggacggagaggtg
gactggaacccgaaggtgaccagagccgtcagtttgaagatcagagggaagcttcatcag
gcgcgtgttgtcatgagtttgggaaacaccatctgggtcgaccccatggtaagaatggtg
agagtgccaggactgaagaccttcatcaacgagtacaacgtccacacggagatcctcgcc
tcaggcttcggggtcagtaatcctcagcatgtggatctgctgaagacggttttgcagaga
gaccagaaccacaacatgctggatcagcagctctcagaacacaggtttgagagcgcttta
ctgtcgtcccagcagaggatggaggtcagtgaagactttctgaccagcaggatgaaggat
ttagtgagcgcccataatgcaatgttcatccagaataacactgcagtggtgtgtaatgga
ggaatgaagagcggagaagatgcagagctgtcagcgaggagcgctgggtctgatctgaat
gggttcgcctctctgatacacaccggaccatccagctctgaatcagagagtgatgaagct
gtggatcagttacggacgcttaataacaacaacaataatacaccacaggctccatataac
tcaaagcttttctcattccagccgaccagtttccacccacagatcaagtggtttcagaga
ggagaatcggtcaccgtctgcataaagctcatcaatccggtgatgcagaaatgtgaattc
agctgcgatgccgtcgtctacagtgggtacgtgaatgaccgtcactactatgccaagctg
gagctgtttggcgacatcatcgctgaggagtgctcatgggaaatgaagtgcaacgagcct
gtgatgaagctgatgaagaaggacaaacgtgactggacgactctgctcaaacacaagagt
gcgtttgtcagctatgagttcgaccgcatcgaggaggcctgtgttacagtcaacggacac
tcgttcctggccgaggtcggagaagacggatgttacgtcagctcagagagcgacagcgac
agcgactga
DBGET
integrated database retrieval system
