Danio rerio (zebrafish): 100534837
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Entry
100534837 CDS
T01004
Symbol
sorcs3a
Name
(RefSeq) VPS10 domain-containing receptor SorCS3
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dre04131
]
100534837 (sorcs3a)
Membrane trafficking [BR:
dre04131
]
Endocytosis
Others
Others
100534837 (sorcs3a)
Endosome - Lysosome transport
100534837 (sorcs3a)
Endosome - Golgi transport
100534837 (sorcs3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
Motif
Other DBs
NCBI-GeneID:
100534837
NCBI-ProteinID:
XP_021332863
ZFIN:
ZDB-GENE-170726-1
UniProt:
A0A8M9Q0Q0
LinkDB
All DBs
Position
1:48106896..48487374
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AA seq
1224 aa
AA seq
DB search
METALGVFPGAHFTISTWLILFFPNVKADISCAPCMSPMQVNYAGDEHLRDPPDSGKYPT
PPDQKKPKLIAVLYPNIGVPTDGFPGIAPKVETNADGINSRAPLGNFAESALDEELFSDE
FMESGRVKRSVPEFMESARGADPLSEEQRKTSALRVDGQGKRAEVRWNREDEQDARVSDS
RPEEPKLTSSTFALAGDSAHNHAVVYWSGKNSSVILILTKLYDFHLGSVTESTLWRSTDY
GSTYERLNDKVGVKTVLSYLYVCPTNKRKIMVLTDPEFESSILISSDEGASYQKYRLNFF
VLSLLFHHTQEDWALAYSHDQKLYSSFDFGRKWQLVHERVTPNRFYWSVTGLDKEFDLVH
MEAHTPDGHCQYVTCRAQACSESSRTHPFPGYIETNSLVVQDEYVFVQVTTTGRASYYVS
YQREAFIRIKLPKYSLPKDMHIVSTDQGQVFTAVQEWNQNDTYNLYISDSRGIYFTLALE
NVRTSRGLGGNSMIDLYEVAGIEGMLIANRKVENQVKTYITYNKGRDWRLLQAPSTDLAG
NPIHCVLPFCSLHLQLQMSENPYLSGSISTKSSAPGVIVATGNIGSELSYNNVAMFILSD
AGNNWRQIFEEEHNVWFLDKGGALVAVKQPTVPTRHLWISFDEGRQWTRHSFSAMPLFVD
GVLVEAGAENQIMTFFGHFSHRSEWQLIKIDYKSVFTRRCTEGDYQTWHLHNQGEPCIMG
QKQIYMKRRPGNYCMVGWDNSRILSAEPCICRAHDFECDYGFERRGDGNCLPAFWFNPSI
VSRSCSQGQNFLNSTGYRKVVANNCTKGVKEMYTARKQQCPNRPPRGLVLTTRDEKLTAN
MGSNVTFLVRLEEGDSMRTNIQLDFGDGTAVSYSNLSWTQEGIKHVYRSAGIFRVTALAE
NSLGFDTSSLYLHVTCPVEHIQLLAPYVVIKNKEVNLTTVVWPSHFRTLTYFWWLGNSTE
PIVTLDSSISHTFSSEGMSTVTVQVSSGDSILQDSRTIAIQEFFKSLLLSFSPNLDEANP
DIPEWRLDVARVIKKAVLQVADVPEEQLLVAVFPGIPTAAELFLLPPRNQSNGRKQTEED
LEQISEILVNALNQISVEFELKPGSRVIVYITQLTLAPLVDSIPRHSSSAMLMLLSVVFL
GLAVFLIYKFKRKIPWINIYAEVNHEKEQEMINTVGQNDATPKITLSEFSTQKELMEKEL
EARAKRGVIHTCESTREIPNCTSV
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgctctgggtgtcttccccggtgctcactttacaatttccacctggctaatt
cttttttttccgaacgtaaaggcagatataagttgcgcgccatgcatgtcgccaatgcaa
gtgaattacgctggggacgagcatctgcgtgacccgcctgattctgggaaatatccgaca
ccaccggatcaaaagaaacccaagctgattgcagtgctttacccgaatattggagtacca
acggatggttttccagggattgcgccgaaagtggaaacaaacgcagatgggataaactcc
cgcgcgcctttggggaacttcgccgagtccgctttagacgaagaattgttttcggatgaa
tttatggaaagtgggagagtcaagagaagcgtgcccgagtttatggagagcgcgcgggga
gctgatcccctctcggaggagcagagaaagacctccgctctgcgggtggacggacagggc
aaacgcgcagaagttcgctggaacagggaggatgagcaggacgccagagtgtcggattcc
agaccagaagagcccaaactaaccagcagcactttcgctctggctggagactccgcgcac
aaccacgcagtcgtgtactggtctggaaaaaacagcagcgtgattctgattctcaccaag
ctgtatgactttcaccttggcagcgtcacagagagcacgctatggagatccacggattat
ggcagcacttatgagaggctgaatgataaagtgggagtgaagacggtgttgagttacctc
tatgtttgccccaccaacaagaggaagataatggtgctgacggacccagagtttgagagc
agtattctcatcagctcagatgaaggtgccagctatcagaagtaccgcttgaacttcttc
gtcttgagtttacttttccatcacacacaggaggactgggctttggcctacagccacgac
cagaagctttacagttcatttgactttggccgaaagtggcagctggttcatgagcgagtg
actcccaaccgcttctactggtcagtaaccggtttggacaaggagtttgatttggtacac
atggaggctcacacacctgatggccattgtcagtatgtgacatgcagagctcaagcctgc
tctgaatccagcagaacgcatccatttcctggatacatcgagaccaactcactcgtggtt
caggatgaatatgtgtttgttcaggtgacgaccactggcagagcgagctactatgtgtcc
tatcaaagagaagcttttatacgcatcaaactgccaaaatactccttgccaaaggacatg
catatcgtgagcacagatcaaggtcaggttttcaccgccgtccaggagtggaaccagaac
gacacctacaacctgtacatatcggactcgcgtgggatttacttcaccctagccttggag
aacgtcaggaccagccgcggcctcggaggaaacagcatgatcgacctttacgaggtagca
gggattgaaggaatgctaatcgctaataggaaggtggagaaccaggtgaagacgtacatc
acttataacaagggccgcgactggaggcttctgcaggcacccagtactgacctcgctgga
aatccgattcactgcgtgctgccgttttgctcgctgcacctacaactgcagatgtcagag
aacccatacctttccggatccatctccaccaagagctctgcgccgggagtcatcgtggct
acaggaaatattggatctgagctgtcttacaataatgtggccatgttcattttatcagac
gcaggcaataactggagacagatttttgaggaagagcacaacgtgtggtttctggacaaa
ggtggagctttggtagccgtgaagcagcccactgtgcccactagacatctttggatcagc
tttgatgaaggtcgtcagtggactcgtcacagtttctcagccatgccgctgttcgtggac
ggtgtgttagtggaggcaggtgcagagaatcagatcatgacatttttcggacacttcagc
catcggtccgaatggcagctcattaaaatcgactacaagtccgtattcaccagaaggtgc
acagaaggggactatcaaacctggcacctgcataaccagggtgagccgtgcataatgggt
caaaagcagatctacatgaagcgtcggcctggaaattattgtatggtgggatgggacaac
tctaggatcctgtctgctgaaccctgcatatgcagagcacatgactttgagtgtgattat
ggttttgagaggagaggggatggaaactgtctgccggcgttttggttcaacccttctata
gtgtctcgaagctgcagccaagggcaaaacttcctcaacagcacaggatatcgtaaggtg
gtagccaataactgcactaaaggtgtgaaggaaatgtacacggccagaaaacagcagtgt
ccgaaccgcccgccacgtggtttagtcctgacaacacgtgacgaaaaactcacagcaaac
atgggcagcaatgtgaccttcctggtgcgacttgaagagggtgactccatgaggaccaac
attcagctggactttggagacggaacggcggtgtcctactccaacctgagctggacgcag
gagggcatcaaacacgtgtaccgcagcgccggcatcttcagggtcacagcactggccgag
aacagcctcgggttcgacacatcctccctttatctgcacgtgacatgccctgtggagcat
attcagctgttggctccatatgtggtcattaagaataaggaggtgaacctgacgacagtg
gtctggccttctcatttcagaacgctcacctatttctggtggctggggaacagcactgag
ccaatagtaacgctggacagcagcatttcccacacattcagcagcgagggcatgtccact
gtgactgttcaggtctcatcaggagactcaatactgcaggacagcagaaccatcgcaata
caggaattcttcaaatcgctgcttttatctttctctccgaatctggacgaggccaaccct
gacatccccgagtggagactggatgtggctcgcgtaattaagaaggctgttcttcaagtc
gctgacgtaccggaagagcagctgctggtggcagtttttccaggcatcccgaccgctgcc
gaactcttcctgcttccaccaaggaaccaatcgaatggcaggaaacaaactgaggaggat
ctggagcagatatctgaaatcctggtcaatgcattaaatcagatttcagtggagtttgag
ttgaagcctggctcccgcgtcatcgtttacatcactcaattaactttagctccactggtg
gactcaatcccaagacacagcagttccgccatgctgatgcttctgtccgtggtgttcctg
ggtttagccgtatttctcatctacaaatttaagagaaaaatcccctggatcaacatctac
gcggaggtgaatcatgagaaggagcaggagatgatcaatacggtgggccagaatgacgcc
acaccaaaaatcaccctgagtgaattctccacccagaaggagctgatggagaaagagctg
gaggcccgtgccaaacgcggtgtgatccacacctgtgaaagcacaagggagatccccaac
tgcacgagtgtctga
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