Danio rerio (zebrafish): 100535713
Help
Entry
100535713 CDS
T01004
Symbol
smarca4b
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100535713 (smarca4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
100535713 (smarca4b)
03036 Chromosome and associated proteins [BR:
dre03036
]
100535713 (smarca4b)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100535713 (smarca4b)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
100535713 (smarca4b)
Chromatin remodeling factors
BAF complex
100535713 (smarca4b)
PBAF complex
100535713 (smarca4b)
GBAF(ncBAF) complex
100535713 (smarca4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
100535713
NCBI-ProteinID:
XP_073809531
ZFIN:
ZDB-GENE-140106-1
Ensembl:
ENSDARG00000104339
LinkDB
All DBs
Position
6:146548..166895
Genome browser
AA seq
1621 aa
AA seq
DB search
MSTPEPPLGGPPCPGPSPGPGPSPGAALGSGLSPGSSHSLMGPSPGPAPAPGHSFPQQTP
VAYSQESLHPMHKPVEEVLSEDAHFSQMKVVPMRGMTRPGSPMDQHSQGYPSPLGASEHV
SSPVSTSGPPSGPLLSTSGSSSASLEGSDGQALPLTRPGAQTVAPGSGSGPPGSSNTPTP
FNQSQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMPQGPSLPTLPPAGGGGGA
GFSRAHGMVGPNMPPPGPSGVQAGVQGQNLNGPPKPWPEAGPLVNAATPSNAPQKLMPPQ
PTGRPSPAPPAVPPAASPVMPPQTQSPGNLAHPSQPTTMVPLHQKQNRLTPVQKPCGLDP
VEILQEREYRLEARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVC
MRRDTALETSLDAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHA
KDFKEYHRSITAKMQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLID
QKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKEKKKKKKKKKLENAEGQTGALGPDG
EPLDETSQMSDLPVKVIHVDSGKILTGVDAPKAGQLDTWLEMNPGYEVAPRSDSEDSGSE
EEEEEEEEPPPLLPTQTPAEEKKKIPDPDSEDVSEVDARHIIEHAKQDVDDEYGSAVIMR
GLQSYYAVAHAVTERVDKQSSLLINGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKT
IQTIALITYLMEYKRLNGPYLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRAFVP
QLRSGKFNVLLTTYEYIIKDKQILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRR
VLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR
RLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK
KGKGGTKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFSGGIVQGLDLYRASGKFEVLD
RILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKTFNDPA
SQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQLNEVRVLRLCT
VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDECVCVYECS
SASRQEEDEVPDDETVNQMIARSEDEFDQFMRMDLDRRREEARNPKRKPRLMEEDELPTW
IMKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEDGTLEEIEEEVRH
RKSARKRRRDRDRDPDSVPSTSARAGGRERDDDSKRQKKRGRPPTEKLSPNPPALTKKMK
KIVDAVIKYKENNGRQLSEVFIQLPSRKELPEYYELIRKPVDFRKIKERIRSHRYRSLND
LERDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSLRQKIEREEESDGEESEEDEEDEGS
DSETRSVKVKIKLSRKERSVERGRGRRRAARTRAKPVVSDDDTEEEPEEDRSNSASEEEQ
G
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccccagagccccctttaggagggccgccctgtccggggccgtctcctggcccg
ggaccatcccccggggctgctctgggttctggactctcccccggatcctcacacagcctg
atgggccccagcccgggaccggctcccgctccgggacactccttcccccagcagaccccc
gtggcatacagccaggagagcctgcaccccatgcacaagccggtggaggaggtgctctct
gaggacgctcacttcagccaaatgaaggtggtgcccatgagggggatgacccgtcctggg
agcccaatggaccagcactcacaagggtacccgtctccacttggtgcatctgagcatgtg
tccagccctgtgtccaccagcgggcctccttcaggtccacttctgtccacctccggctcc
agctctgcatctctggaaggttcagatgggcaggcgctgccactgacccgcccgggggcc
caaactgtggctcctggctctggcagtggccccccaggctcctccaacacacccacaccc
ttcaaccagagccagctgcaccagctgcgtgcccagatcatggcctacaaaatgctggca
cgtgggcaaccgctgccggaccacctgcagatggcagtgcagggcaagagacccatgcca
gggatgccacaggggccgtcactgcccacactgccccctgctggaggaggaggaggagcc
ggcttcagcagagcacatggaatggtgggacccaacatgcctccgccggggccgtctgga
gtccaggctggtgttcagggccagaacctcaacggacctcccaaaccctggcctgaagca
ggtcctctggtgaacgcagcaaccccgtccaatgcccctcagaagctgatgccgccacag
cccactggacgcccctcacctgcaccacctgctgtgccacccgctgcctcacccgtcatg
ccaccgcaaactcaatctccaggaaacctcgcccacccgtcccagcccaccaccatggtg
ccgctgcatcaaaagcagaaccgcctcacaccggtgcaaaagccctgcggtctggatcca
gtggagatcctgcaggagagggagtacaggctcgaggctcgaatcgcgcaccggattcag
gagctggagaacctgcccgggtctctggctggagatctgcgcaccaaagccaccatagaa
ctcaaagcccttcggctgctcaacttccagagacagctgcggcaggaggtggtggtctgc
atgcggagggacacagctctggagacgtctctggacgctaaagcctacaagcgcagcaag
cgtcagtcgctgagagaggccagaatcacagagaagctggagaagcagcagaagatcgag
caggagcgcaaacgcaggcagaagcaccaggagtatctcaacagcatcctgcagcacgcc
aaagacttcaaggagtaccaccgctccatcacggccaagatgcagaagctgaccaaagcg
gtggccacgtaccacgctaacactgagcgcgagcagaagaaggagaacgagcgcatcgag
aaggagcgcatgcggcgcctgatggctgaggatgaggagggttacagaaagctaatcgac
cagaagaaggacaagcgtctggcgtatctgctgcagcagacagatgagtatgtggccaac
ctgacggagctggtgcgcgctcataaagctgttcaggccctgaaagagaagaagaagaaa
aagaagaagaagaagctggagaatgctgaggggcagaccggagctctggggccagatgga
gagcccctggatgagacgagtcagatgagtgatcttccagtgaaggtgattcatgtggac
agtgggaagattctgacaggtgtggatgctcctaaagctggacagctggacacctggctg
gagatgaaccctgggtatgaggtcgctccgcggtctgacagtgaggactccgggtcagag
gaggaggaggaagaggaagaggaacctcctccactgcttccaactcagacacctgcagaa
gagaagaagaagatccctgacccggacagtgaggacgtgtcagaggtggacgcgcggcac
atcattgagcatgctaagcaggatgtggatgatgaatacggcagcgctgtgatcatgcgt
ggtttacagtcgtattacgctgtagctcacgccgtcactgagcgcgtggacaaacagtcg
tcactgctgatcaacggccaactcaagcagtaccagatcaagggtttggagtggctggtg
tctctgtataataataacctgaacgggatcctggcagacgagatgggcttgggcaaaacc
atccagaccatcgccctgatcacgtacctgatggagtacaagcgtctgaacgggccgtac
ctcatcatcgtgccgctctcaactctgtccaactgggtctatgagtttgacaaatgggct
ccgtctgtggtgaaggtctcctataaggggtctccggccgccagaagagccttcgtccct
cagctgcgcagcggcaagttcaacgttctgctgaccacctatgagtacatcatcaaagac
aagcagatcctggccaagatccgctggaagtacatgatagtggatgaagggcaccgcatg
aagaaccaccactgcaagctgacgcaggtgttgaacacacactacctggccccgcggcgg
gtgctgctgaccgggacgccgctgcagaacaagctgcccgagctctgggcgctgctcaac
ttcctgctgcccaccatcttcaagagctgcagcaccttcgagcagtggttcaacgccccc
ttcgccatgaccggcgagaaggtggacctgaatgaagaggagaccatcctgatcatccgg
cgtctgcataaagttctccgccccttcctgttacgcagactcaagaaggaagtggaggcg
caactgccggagaaggtggagtatgtcatcaagtgtgatatgtcggctcttcagagggtt
ctgtaccgacacatgcaggccaaaggggttctgctgaccgacggctccgagaaggataag
aaaggtaaaggcggcactaagactctaatgaacactataatgcagctgaggaagatctgt
aatcacccctacatgttccagcagattgaggagtcattctcagagcatctgggcttctcc
ggcggaatcgttcaagggctggatttataccgagcctcggggaagttcgaggtgctggac
cgcattctgccaaaactacgagccacaaaccacaaagtgctgctcttctgccagatgacg
tctctgatgaccatcatggaggattacttcgcctaccgcaactttaagtatctgcgtctg
gacggcaccacgaaggctgaggaccgggggatgctgctgaagaccttcaatgatccggcc
tctcagtacttcatcttcctgctgagcaccagagcgggcggcctgggcctgaacctgcag
agcgccgacacggtcatcatcttcgacagcgactggaaccctcaccaggacctccaggcg
caggaccgagcacaccgcatcgggcagctgaatgaggtgcgggttctgcgtctctgcacc
gtcaacagtgtggaggaaaagattctggcggccgcaaaatacaagctgaacgtggaccag
aaggtgatccaggccgggatgttcgaccagaagtcgtcgagtcatgagcggcgagcgttt
ctgcaggcaatcctggagcacgaggagcaagacgagtgtgtgtgtgtttatgaatgctct
tctgcttcccgtcaggaggaggacgaggtgccggatgatgagacggttaatcagatgatc
gccaggagtgaagacgagttcgaccagttcatgcggatggatctggaccgccggcgtgag
gaggcgcggaacccgaagcgtaagccgcggctgatggaggaggacgagctgcccacctgg
atcatgaaggatgacgcagaggtggagcgactcacctgtgaggaggaggaggagaagatg
ttcggccgcggctcccgccagaggaaggaggtggactacagcgactcactgaccgagaaa
cagtggctgaaggctatagaggacggtacgctggaggagatagaggaggaagtgcggcac
aggaagtcagctcgtaagcgtcggcgggatcgtgatcgagatccagactcggtcccatcc
acatctgcacgcgccggcggccgagagcgagacgacgacagcaaacggcagaagaagcgc
ggtcgaccaccgacggagaaactctcgccaaacccgccggcgctcaccaagaagatgaag
aagatcgtggatgcagtcatcaaatacaaggagaataacggccgtcagctgagcgaggtc
ttcatccagctgccgtcccggaaggagcttcctgaatattatgagctgatccgcaaacct
gtggacttcaggaagatcaaggagcggattcgcagccatcgctaccgcagcctcaatgac
ctggagagagacgtgatgctgctgtgccagaacgcacaaaccttcaacctggagggctca
ctgatctatgaggactctatcgttctgcagtcggttttcaccagcctgcgtcagaagatc
gagagagaagaagagagcgatggagaggagagtgaggaagacgaggaggacgaaggctct
gattcagagactcgctcagtgaaggtgaagattaagctgagccgtaaggagcgcagtgtg
gagcgcggtagggggcgccgcagagccgccaggactcgagccaagccggtggtgagcgac
gacgacacggaggaggagccagaggaggatcgctccaacagcgccagtgaagaggagcaa
ggatga
DBGET
integrated database retrieval system
