Danio rerio (zebrafish): 101884357
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Entry
101884357 CDS
T01004
Symbol
col20a1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
dre
Danio rerio (zebrafish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
NDNF
FN3_Tor_3rd
YjeF_N
Motif
Other DBs
NCBI-GeneID:
101884357
NCBI-ProteinID:
XP_005162180
Ensembl:
ENSDARG00000037517
UniProt:
A0A8M2B999
LinkDB
All DBs
Position
23:20448905..20511954
Genome browser
AA seq
1587 aa
AA seq
DB search
MRQVQASASGFLIGTNTFTMAHISPLVLPERMTIFLVTVLLILVSEVQTQGRLKLTVLSE
DRLQMKWKEAEGPVQGYKVRVRPITEVPQPELMLTTTRGRATVAGLDSRQEYLLQVMAIN
GTQEKLIAKRRFTIDGLREEELIRSGNREQKKKTPAIGSGSGEVDDVTEALEGLPTVLYR
EPTTTEPSVVPELEPEADQGTKEKKKKKDKNRSKAEDRIDQEENEGKSAKEEDSDTSKLR
KTTPTQPGTAVSTRKPFECSAEAQAELVLLVDGSWSIGRTNFRKVREFLQGLAVPFHIGP
EGVQIALSQYSGDPRTEWHLNNFTSKEPLLEAVRNFRYKGGNTFTGQALIHALENNLKEE
VGARPNTPQFLLLLTDGKSQDDAIAAANRLKNAGVEIIAIGVKNADEAELRQVASEPLEL
NVYKVNDFPLLSKLVGKLARILCGKIEDRIKAKRMEHPTQEPVLSFPSPTDLQYVGLGSR
ELRLRWTVPSRNPQQYRVVYHTAEGQSLNELVVNGTESTTLLTGLSSQTQYHLSIFPVYE
NKVGSALRGTFTTLPLAIPEALEVTASSASSLRVRWQPAAGATQYMALYSALNDGEPDDA
KEVKFGPAQTDVELVDLIPSTDYSVTLYALYDEDPSDPITAIGTTFPLPSPLSLQFPMVS
HSTLMVTWVPGAVDVPAHRIIYSTNHGSDVKQVEVRGVNTVLLQNLSSLSRYLVSVHSLY
EKGLSSPVTANVTTLRVPAPSDLRVTNFTGSEITVRWEAAADDVVFYLIKWISLNGGDLS
QLMINGKGEGAILEKVEEDKEYQISLSASYADGAQSEAVAIRYSTLSGGGPSSLSISEET
AVSMLVTWVHPNAHVQQYRVSFTPLNGDARENTVSLAGSERRILLQNLLPDTRYSVLVTA
EYRSREGGSASAQGKTTSLRVSSVSVVRSDHSSICVSWRPVPAVSGYRIVIQALREKQTK
EEMVDASSSSHCFSELQPETVYRISVHSRLGAVEGAAVTILHPTATAPVRVQVPPGLHPI
QREVCPEMTVRNYVLKGFDMMEAFGLTQRAHSTIEGVAAEPFIFSTLPSYTLYRDVQLTQ
STGFIHPAGFSPEHTISMVFRLLQDSPREPFALWQLTDNDFQPKMGVVLDPEKKVLLYFS
LDYKGEIQELTFDQPQVHSIFYGSFHKIHLSVSQVSVSLSVDCQRVGERPARPLGTLPTD
GFEMLGKLVKTRGPHSGSAAFQLQSFEIVCNTTWASEDSCCDLPSQRDEESCPAPAYACT
CTTDVPGSPGDTGPSGKPGVRGEKGEKGEVGQKGEVGPPGKSGPEGGFGALGPAGPRGIA
VMGKMGPPGARGEKGDIGRPGSQGLPGPPGQKGGEGNPGPKGTRGVEGNIGPPGITGPRG
LQGMPGHPGPVGDRGPLGPVGPTGLPGSKGERGEKGEPQSLAMIYQLVSQACEKLVHNEV
LKMDAFLNELNRKPVPIQEPVAPPGEPGIPGGRGAPGPRGPQGRLGSRGMPGKPGYPGEQ
GRRGMAGEKGSPGANAVGPQGMKGFGGPPGEAKIGEPGPKGEDGKAGPTGIPGAAGQQGE
MGPSGVCDSSGCYQGPPAEDPYLGYRP
NT seq
4764 nt
NT seq
+upstream
nt +downstream
nt
atgcgccaggtacaggcttcagcttcaggttttttaattggtactaacacattcacgatg
gcccacatctctcctctcgtcctcccagagcgaatgacaatcttcctggtgactgttctc
ctgatactggtttctgaagttcaaacacaaggcagactgaagctaactgttctgtctgaa
gatcggttacagatgaaatggaaggaggctgaagggccggttcagggctacaaggtccgt
gtgcgacccattacagaagttcctcagccagagctgatgctgacaaccacacgtggacgt
gccacagtcgctggcctggactccagacaggaatacctccttcaggttatggcaatcaac
gggacacaggagaagcttattgcaaaaagacgctttacaattgatgggctgcgtgaggaa
gagttgatccgcagtgggaaccgggagcagaagaagaaaactcccgctattggctcaggc
tctggagaggtggatgacgtgacggaggctttagaaggccttcccactgtgctctacaga
gaaccaaccactacagagccttctgttgtaccagagcttgagcctgaagctgaccaaggc
accaaagagaagaaaaagaagaaggacaaaaatcgatccaaggctgaagatagaattgat
caggaagaaaatgaagggaagtcagcaaaagaggaggacagcgacaccagtaaactgaga
aaaaccaccccaactcaacctggcactgctgtttccacacgaaagccatttgaatgcagt
gctgaggctcaggcggaactggtcctgctggtggacggatcctggagcatcggtcggaca
aacttcagaaaagtgagggagttccttcagggccttgctgtcccctttcacatcggccca
gagggcgtccagatagcgctgtctcagtatagtggagatccacgcacagagtggcatctt
aacaacttcacatcaaaagagccgctcctggaggccgtcaggaacttcagatacaaagga
gggaacacttttacagggcaggctctcatccacgctcttgagaacaatctgaaggaggag
gtgggtgcgcgacccaacactcctcagttcttgcttcttctgactgatggcaaatctcag
gatgacgccattgctgctgccaacagactgaagaatgctggtgtggagatcattgctata
ggtgtgaaaaatgcagatgaggcagagttgaggcaggtggcgtctgaacctctggagctg
aatgtgtataaggtgaatgattttcctctgctcagtaaactggtgggaaaactagcacgc
atcctctgtggcaagattgaagaccgtattaaagccaagagaatggagcatccaactcag
gaaccagttctgtcatttcccagcccaactgatctgcagtatgtaggactgggctccaga
gagttgcgtctgcgctggaccgtccccagcagaaatccccagcaatacagagtggtttac
cacaccgctgaaggacagagccttaatgagctggtggtgaatggaacagagtccacaact
ctgctgacaggactgtcctcacaaacacagtaccatctatccatcttccccgtctatgag
aataaagtgggctccgctctcagaggcaccttcaccacattaccgttggcaatccctgag
gctctggaggtcacagcctcctctgccagcagtctgcgggtgcgctggcagccggctgct
ggagccacacagtacatggccttatactcagcactcaatgatggagagcctgatgatgcc
aaagaggtgaagtttggacctgctcagacagatgttgaattggtggatttgatcccatcc
acggattattcagtcacactttatgcactgtatgatgaggaccccagtgacccaatcaca
gccatcggcaccacattcccattgccctctccgctcagtttgcagtttcccatggtcagt
cacagcactctgatggtcacttgggtccctggagctgtcgatgttcccgcccaccggatc
atttacagcaccaatcacggcagtgatgtcaagcaggtggaagtcagaggtgtgaacaca
gtgttgctgcagaatctgtcatccctctccaggtatctcgtgtcagtccattcactctac
gagaagggcctgtccagcccggtcacggccaatgttactaccttaagggttccagctcca
tcagatctgagggtcactaacttcaccggcagtgagataacagtacgatgggaagctgca
gctgatgatgtggtcttttatctcatcaaatggatctcgctcaatggaggagacctcagc
cagctgatgataaatgggaaaggcgagggtgctatcttggaaaaggttgaagaagacaag
gaatatcagatttctctctctgcatcatatgctgacggcgctcagagtgaagctgtggcg
atacgatacagcactttatctggaggtggtccaagcagtttatccatctcagaagagact
gcagtcagtatgctggtgacctgggttcaccccaatgcgcatgtgcagcagtaccgtgtg
tcatttactccgctcaatggagatgcgagggaaaacacggtgtcattggcaggcagtgag
aggcgcatcctgctgcagaatctgctgcctgacactcgctacagtgtgctggtgactgct
gaataccgcagcagagagggcggcagcgcctctgcacagggcaagaccaccagtctgcgg
gtgagcagtgtaagtgtggttcgctcggaccactccagcatatgtgtgtcctggaggccc
gttccagcagtcagcggatatcgcatagtcatccaggccctcagagaaaagcagactaaa
gaggagatggtggatgcttccagcagcagtcactgtttctctgagctgcagcctgaaacc
gtgtaccgaatcagtgttcattcacgtctgggagccgtagagggcgctgctgtcaccatt
cttcaccccacagctactgctccagtgagagttcaggttcctcctggactgcatcccatt
cagagagaagtgtgtcctgagatgacagtcagaaattatgtgcttaaaggcttcgacatg
atggaagcgttcggtctcactcagagagctcactctactattgaaggagtagcagctgaa
cctttcatcttcagcactttgccaagttacaccctttacagagacgtacagctcacccag
agcacaggcttcatccacccagctggcttttctccagagcacaccatcagtatggtcttc
aggctcctgcaagattcacccagagagcccttcgccctctggcagctcaccgacaatgac
ttccagcccaaaatgggggtcgtgctggaccctgagaagaaagttctactgtatttcagt
ctagactataaaggagagatccaggaactgacctttgaccagccacaagtccactcaatt
ttctatggcagctttcataagatccatttatcggtcagtcaggtgagtgtgtcactgtct
gtggattgccagcgggtaggagaaagacccgcacggcccttgggaaccttgcccactgat
ggctttgagatgctgggcaaactagtgaagacacgtggacctcacagcggatctgctgca
tttcagctgcagtcctttgagattgtgtgcaacactacttgggcgtcagaagacagctgc
tgtgatctgccctcacagagagatgaggagagctgtccggcccctgcttatgcctgcact
tgcaccacagatgtcccaggatcacctggagacactgggccatctgggaaacctggtgtt
cgtggtgagaagggggagaagggagaggtgggacaaaagggtgaggtaggccctcctggt
aaatcaggccctgagggtggctttggtgctcttggacctgctggtcctcgtggaatagct
gtaatgggtaaaatgggtccaccaggagcaagaggagaaaaaggagatattggaaggcct
gggagtcagggtttaccagggcctcctggtcaaaaaggtggagaaggcaatcctggtcca
aagggcactagaggagtggagggtaacatcggacccccaggcattacaggaccaagaggg
ttacagggtatgcctggacatccaggaccagtgggagacagaggaccactcggccctgta
gggcccactggtcttcctggaagtaaaggtgaacgaggagagaagggcgagccacagtct
cttgcaatgatctaccagcttgtttcacaggcctgtgaaaagcttgtccacaatgaagtg
ctgaagatggatgcttttctaaacgagctgaatcggaagccagtgcccatccaggagcca
gtagcacctcccggagagccgggcataccagggggaagaggggcacccggaccccggggc
cctcagggtcgactgggaagcagagggatgcctgggaaacctggttatcctggagagcaa
ggacgcagaggcatggctggtgagaagggctctcccggagcaaatgcagtgggaccacag
ggaatgaagggttttggaggacctccaggtgaagctaaaataggggaaccaggtcccaaa
ggtgaggatggtaaagcaggacctacaggtattcctggagctgcaggtcaacagggagaa
atgggaccctcgggtgtttgtgacagcagtggatgttatcaagggcctcctgcagaagat
ccatacctcgggtaccgtccttga
DBGET
integrated database retrieval system
